base_ec-d	base_ec-d	base_ec	majority	aspartate kinase	2.7.2.4, 1.1.1.3		3	2, 3
base_tigr	base_ec	base_ec	all-same	homoserine kinase (EC 2.7.1.39)	2.7.1.39		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	L-threonine synthase (EC 4.2.3.1)	4.2.3.1		3	1, 2, 3
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
base_one miss	base_both miss	base_one miss	all-hp	hypothetical protein	HP		0	
base_one HP	base_one HP	0	majority	UPF0246 protein YaaA			1	
base_tigr	0	0	majority	amino acid carrier protein			3	1, 2
base_tigr	base_ec	base_ec	all-same	transaldolase (EC 2.2.1.2)	2.2.1.2		3	1, 2, 3
base_lit-s	0	0	majority	molybdopterin adenylyltransferase	2.7.7.75		3	1, 2
gs-sh	gs-sh	map	all-same	Predicted membrane protein			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	lit-s	all-same	FIG00638537: hypothetical protein			0	2, 3
base_lit-s	lit-s	lit-s	all-same	chaperone protein DnaK			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	chaperone protein DnaJ			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one miss	base_both miss	base_one miss	majority	Hok/gef family.			1	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_tigr	lit-s	gs-sh	all-same	sodium/proton antiporter, NhaA family (TC 2.A.33.1.1)			3	1, 2, 3
gs-sh	lit-s	map	all-same	Transcriptional regulator			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one miss	base_both miss	base_one miss	majority	Transposase and inactivated derivatives			1	
base_tigr	map	lit-s	all-same	SSU ribosomal protein S20P			3	1, 2, 3
base_tigr	base_ec-d	base_ec-d	majority	FMN adenylyltransferase/riboflavin kinase	2.7.1.26, 2.7.7.2,2.7.7.2, 2.7.1.26		3	1, 2
base_tigr	base_ec	base_ec	all-same	Isoleucyl-tRNA synthetase (EC 6.1.1.5)	6.1.1.5		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	signal peptidase II (EC:3.4.23.36). Aspartic peptidase. MEROPS family A08	3.4.23.36		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	FKBP-type peptidyl-prolyl cis-trans isomerases 2	5.2.1.8		3	1, 2, 3
base_tigr	base_lit-s	base_ec	all-same	4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)	1.17.1.2		3	1, 2, 3
gs-sh	gs-sh	map	all-same	Inosine-uridine nucleoside N-ribohydrolase	3.2.-		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	dihydrodipicolinate reductase (EC 1.3.1.26)	1.3.1.26		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	carbamoyl-phosphate synthase, small subunit	6.3.5.5		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	carbamoyl-phosphate synthase, large subunit	6.3.5.5		3	1, 2, 3
base_one miss	0	base_one miss	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	0	majority	Transcriptional activatory protein CaiF			1	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	Enoyl-CoA hydratase/carnithine racemase	4.2.1.-		3	1, 2
pfam-sh	0	0	majority	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-		3	1, 2
gs-sh	lit-s	map	all-same	Predicted acyl-CoA transferases/carnitine dehydratase	2.8.3.-		3	1, 2, 3
gs-sh	lit-s	map	all-same	Acyl-CoA dehydrogenases	1.3.99.-		3	1, 2, 3
gs-sh	base_lit-s	map	all-same	choline/carnitine/betaine transport			3	1, 2, 3
0	0	gs-sh	majority	electron transfer flavoprotein beta subunit			3	2, 3
0	0	gs-sh	majority	electron transfer flavoprotein alpha subunit apoprotein			3	2, 3
0	0	gs-sh	majority	Dehydrogenases (flavoproteins)	1.5.5.-		3	2, 3
0	0	gs-sh	majority	Ferredoxin-like protein			3	2, 3
0	0	gs-sh	majority	Sugar phosphate permease			3	2, 3
gs-sh	lit-s	map	all-same	Kef-type potassium/proton antiporter accessory protein, CPA2 family (TC 2.A.37.1)			3	1, 2, 3
gs-sh	lit-s	map	all-same	Kef-type potassium/proton antiporter, CPA2 family (TC 2.A.37.1)			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	dihydrofolate reductase (EC 1.5.1.3)	1.5.1.3		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	Bis(5'nucleosyl)-tetraphosphatase, ApaH	3.6.1.41		3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_lit-s	gs-sh	gs-sh	all-same	dimethyladenosine transferase	2.1.1.182,2.1.1.-		3	1, 2, 3
base_tigr	base_lit-s	base_ec	all-same	4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)	1.1.1.262		3	1, 2, 3
gs-sh	gs-sh	base_ec	all-same	periplasmic chaperone for outer membrane proteins SurA	5.2.1.8		3	1, 2, 3
gs-sh	0	0	majority	Organic solvent tolerance protein OstA			3	1, 2
gs-sh	lit-s	pfam-sh	all-same	DnaJ-domain-containing proteins 1			3	1, 2, 3
base_one HP	0	base_one HP	majority	FIG00638467: hypothetical protein			1	
base_lit-s	base_lit-s	base_lit-s	all-same	hypothetical protein			0	1, 2, 3
base_tigr	gs-sh	lit-s	all-same	ribosomal large subunit pseudouridine synthase A	5.4.99.28, 5.4.99.29,5.4.99.-		3	1, 2, 3
gs-sh	0	0	majority	Superfamily II DNA/RNA helicases, SNF2 family	3.6.4.-		3	1, 2
base_ec	base_lit-s	base_ec	all-same	DNA polymerase elongation subunit (family B)	2.7.7.7		3	1, 2, 3
base_tigr	base_lit-s	base_ec	all-same	L-ribulose 5-phosphate 4-epimerase (EC 5.1.3.4)	5.1.3.4		3	1, 2, 3
base_ec	base_lit-s	base_ec	all-same	L-arabinose isomerase (EC 5.3.1.4)	5.3.1.4		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	L-ribulokinase (EC 2.7.1.16)	2.7.1.16		3	1, 2, 3
gs-sh	lit-s	map	all-same	transcriptional regulator, AraC family			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Uncharacterized membrane-associated protein			3	1, 2, 3
base_lit-s	gs-sh	gs-sh	all-same	thiamine ABC transporter, ATP-binding protein			3	1, 2, 3
base_tigr	0	0	majority	thiamine ABC transporter, permease protein			3	1, 2
gs-sh	0	0	majority	thiamine ABC transporter, periplasmic binding protein			3	1, 2
gs-sh	0	0	majority	ABC-type uncharacterized transport system, periplasmic component			3	1, 2
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
gs-sh	0	0	majority	sugar efflux transporter			3	1, 2
base_ec-d	base_lit-s	base_ec-d	majority	3-isopropylmalate dehydratase, small subunit	4.2.1.33, 4.2.1.35		3	1, 3
base_ec-d	base_lit-s	base_ec-d	majority	3-isopropylmalate dehydratase, large subunit	4.2.1.33, 4.2.1.35,4.2.1.33		3	1, 3
base_lit-s	base_lit-s	base_lit-s	all-same	3-isopropylmalate dehydrogenase	1.1.1.85		3	1, 2, 3
base_tigr	base_lit-s	base_ec	all-same	2-isopropylmalate synthase (EC 2.3.3.13)	2.3.3.13		3	1, 2, 3
gs-sh	0	0	majority	Transcriptional regulator			3	1, 2
base_tigr	base_ec	base_ec	all-same	acetolactate synthase, large subunit (EC 2.2.1.6)	2.2.1.6		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	acetolactate synthase, small subunit (EC 2.2.1.6)	2.2.1.6		3	1, 2, 3
gs-sh	gs-sh	pfam-sh	all-same	transcriptional regulator, LacI family			3	1, 2, 3
lit-s	gs-sh	gs-sh	all-same	mraZ protein			3	1, 2, 3
base_lit-s	gs-sh	gs-sh	all-same	S-adenosyl-methyltransferase MraW	2.1.1.199		3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	cell division protein FtsL			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	peptidoglycan synthetase FtsI (EC 2.4.1.129)	2.4.1.129		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)	6.3.2.13		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10)	6.3.2.10		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13)	2.7.8.13		3	1, 2, 3
base_tigr	base_lit-s	base_ec	all-same	UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)	6.3.2.9		3	1, 2, 3
base_tigr	lit-s	gs-sh	all-same	cell division-specific peptidoglycan biosynthesis regulator FtsW			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	UDP-N-acetylglucosamine-N-acetylmuramylpentapeptide N-acetylglucosamine transferase	2.4.1.227		3	1, 2, 3
base_tigr	base_lit-s	base_ec	all-same	UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)	6.3.2.8		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	D-alanine--D-alanine ligase (EC 6.3.2.4)	6.3.2.4		3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	Cell division septal protein			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	cell division protein FtsA			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	cell division protein FtsZ			3	1, 2, 3
base_tigr	base_lit-s	lit-s	all-same	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108)	3.5.1.108		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	protein translocase subunit secM			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	protein translocase subunit secA			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	8-oxo-dGTPase	3.6.1.-,3.6.1.55		3	1, 2, 3
base_one HP	base_one HP	0	majority	FIG003276: zinc-binding protein			1	
base_one HP	base_one HP	lit-s	all-same	FIG002842: hypothetical protein			0	2, 3
base_tigr	base_ec	base_ec	all-same	dephospho-CoA kinase (EC 2.7.1.24)	2.7.1.24		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	guanosine monophosphate reductase, eukaryotic	1.7.1.7		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	0	0	majority	prepilin-type N-terminal cleavage/methylation domain			3	1, 2
base_tigr	base_ec	base_ec	all-same	nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19)	2.4.2.19		3	1, 2, 3
gs-sh	base_ec	map	all-same	Negative regulator of beta-lactamase expression			3	1, 2, 3
gs-sh	lit-s	orth	all-same	Membrane protein required for beta-lactamase induction			3	1, 2, 3
gs-sh	lit-s	map	all-same	aromatic amino acid:proton symporter, AAT family (TC 2.A.3.1.3)			3	1, 2, 3
gs-sh	0	0	majority	transcriptional regulator, GntR family			3	1, 2
base_tigr	base_ec	base_ec	all-same	pyruvate dehydrogenase E1 component, homodimeric type	1.2.4.1		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form	2.3.1.12		3	1, 2, 3
base_tigr	base_ec-d	base_ec-d	majority	dihydrolipoamide dehydrogenase	1.8.1.4		3	1, 2
base_one HP	base_one HP	0	majority	Putative exported protein			1	
base_tigr	base_ec-d	base_ec-d	majority	aconitase	4.2.1.3, 4.2.1.99,4.2.1.3		3	1, 2
base_one HP	base_one HP	lit-s	all-same	FIG00638902: hypothetical protein			0	2, 3
base_tigr	base_ec	base_ec	all-same	adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)	4.1.1.50		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	spermidine synthase (EC 2.5.1.16)	2.5.1.16		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	gs-sh	map	all-same	cell division protein SufI			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	1.1.5.2		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	hypoxanthine phosphoribosyltransferase	2.4.2.8		3	1, 2, 3
base_ec	base_ec	base_lit-s	all-same	Carbonic anhydrase	4.2.1.1		3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	ABC-type multidrug transport system, ATPase component			2	2, 3
gs-sh	orth	map	all-same	ABC-type polysaccharide/polyol phosphate export systems, permease component			3	1, 2, 3
map	tf_idf	base_ec	all-same	Phosphotransferase system, mannose/fructose-specific component IIA	2.7.1.69		3	1, 2, 3
0	lit-s	0	majority	Predicted xylanase/chitin deacetylase			3	1, 3
base_tigr	base_ec	base_ec	all-same	L-aspartate 1-decarboxylase (EC 4.1.1.11)	4.1.1.11		3	1, 2, 3
base_tigr	0	0	all-same	conserved hypothetical protein (putative transposase or invertase)			2	1, 2
base_ec	base_ec	base_ec	all-same	pantothenate synthetase (EC 6.3.2.1)	6.3.2.1		3	1, 2, 3
base_tigr	base_lit-s	base_ec	all-same	ketopantoate hydroxymethyltransferase (EC 2.1.2.11)	2.1.2.11		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	tf_idf	0	majority	P pilus assembly protein, pilin FimA			3	1, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	lit-s	map	all-same	P pilus assembly protein, porin PapC			3	1, 2, 3
0	tf_idf	0	majority	P pilus assembly protein, chaperone PapD			3	1, 3
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	base_ec	base_lit-s	all-same	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	2.7.6.3		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	poly(A) polymerase	2.7.7.19		3	1, 2, 3
base_lit-s	gs-sh	gs-sh	all-same	glutamyl-queuosine tRNA(Asp) synthetase	6.1.1.-		3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	transcriptional regulator, TraR/DksA family			3	1, 2, 3
base_lit-s	0	0	majority	sugar fermentation stimulation protein			3	1, 2
base_lit-s	lit-s	lit-s	all-same	2'-5' RNA ligase	6.5.1.-		3	1, 2, 3
base_lit-s	base_lit-s	base_lit-s	all-same	ATP-dependent helicase HrpB	3.6.4.13		3	1, 2, 3
base_lit-s	0	0	majority	penicillin-binding protein 1B	2.4.1.129, 3.4.-		3	1, 2
gs-sh	0	0	majority	TonB-dependent siderophore receptor			3	1, 2
base_ec	gs-sh	gs-sh	all-same	ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components	3.6.3.34		3	1, 2, 3
gs-sh	0	0	majority	ABC-type Fe3+-hydroxamate transport system, periplasmic component			3	1, 2
gs-sh	0	0	majority	ABC-type Fe3+-siderophore transport system, permease component			3	1, 2
base_tigr	base_ec	base_ec	all-same	glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)	5.4.3.8		3	1, 2, 3
gs-sh	base_lit-s	orth	all-same	Chloride channel protein EriC			3	1, 2, 3
gs-sh	0	0	majority	Iron-sulfur cluster assembly accessory protein			3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	gs-sh	map	all-same	ABC-type Fe3+-hydroxamate transport system, periplasmic component			3	1, 2, 3
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
base_ec	base_ec	base_ec	all-same	deoxyguanosinetriphosphate triphosphohydrolase, putative	3.1.5.1		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	peptidase Do. Serine peptidase. MEROPS family S01B	3.4.21.107		3	1, 2, 3
gs-sh	0	0	majority	transcriptional regulator, CdaR family			3	1, 2
base_one HP	base_one HP	0	majority	Chromosome segregation ATPase			1	
0	0	orth	majority	Predicted phosphohydrolases			3	2, 3
base_tigr	base_ec	base_ec	all-same	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117)	2.3.1.117		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	UTP--GlnB (protein PII) uridylyltransferase, GlnD	2.7.7.59		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	methionine aminopeptidase, type I (EC 3.4.11.18)	3.4.11.18		3	1, 2, 3
base_one miss	lit-s	base_one miss	all-same	FIG00637992: hypothetical protein			0	1, 3
base_tigr	0	0	majority	SSU ribosomal protein S2P			3	1, 2
base_tigr	lit-s	tf_idf	all-same	translation elongation factor Ts (EF-Ts)			3	1, 2, 3
base_tigr	gs-sh	lit-s	all-same	uridylate kinase (EC 2.7.4.22)	2.7.4.22		3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	ribosome recycling factor			3	1, 2, 3
base_tigr	base_lit-s	base_ec	all-same	1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)	1.1.1.267		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31)	2.5.1.31		3	1, 2, 3
base_one HP	base_one HP	base_lit-s	all-same	hypothetical protein			1	2, 3
base_ec	base_ec	base_ec	all-same	CDP-diglyceride synthetase	2.7.7.41		3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	site-2 protease. Metallo peptidase. MEROPS family M50B	3.4.24.-		3	1, 2, 3
base_tigr	0	0	majority	Beta-barrel assembly machine subunit BamA			3	1, 2
gs-sh	0	0	majority	periplasmic chaperone for outer membrane proteins Skp			3	1, 2
base_tigr	base_lit-s	lit-s	all-same	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191)	2.3.1.191		3	1, 2, 3
base_tigr	0	0	majority	3-hydroxyacyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.-)	4.2.1.-		3	1, 2
base_tigr	base_ec	base_ec	all-same	acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129)	2.3.1.129		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	lipid-A-disaccharide synthase (EC 2.4.1.182)	2.4.1.182		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	RNase HII (EC 3.1.26.4)	3.1.26.4		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	DNA polymerase III, alpha subunit (EC 2.7.7.7)	2.7.7.7		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	acetyl-CoA carboxylase carboxyltransferase subunit alpha	6.4.1.2		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	L-lysine decarboxylase (EC 4.1.1.18)	4.1.1.18		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			2	
gs-sh	lit-s	gs-sh	all-same	tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain			3	1, 2, 3
gs-sh	0	0	majority	transcriptional antiterminator, Rof			3	1, 2
base_one HP	base_one HP	lit-s	all-same	FIG00905232: hypothetical protein			0	2, 3
base_one HP	base_one HP	0	majority	YaeQ protein			1	
gs-sh	0	0	majority	Protein chain release factor B			3	1, 2
pfam-sh	pfam-sh	pfam-sh	all-same	Uncharacterized lipoprotein NlpE involved in copper resistance			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Cell wall-associated hydrolases (invasion-associated proteins)			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	prolyl-tRNA synthetase (EC 6.1.1.15)	6.1.1.15		3	1, 2, 3
base_one HP	base_one HP	0	majority	putative methyltransferase, YaeB/AF_0241 family			1	
base_one HP	lit-s	base_one HP	all-same	Protein RcsF			2	1, 3
gs-sh	0	0	majority	lipoprotein, YaeC family			3	1, 2
gs-sh	gs-sh	map	all-same	ABC-type metal ion transport system, permease component			3	1, 2, 3
base_lit-s	0	0	majority	D-methionine ABC transporter, ATP-binding protein			3	1, 2
gs-sh	gs-sh	map	all-same	D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase	3.1.3.83, 3.1.3.82,3.1.3.-		3	1, 2, 3
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_one HP	base_one HP	gs-sh	all-same	transcriptional regulator, LysR family			2	2, 3
base_ec	tf_idf	tf_idf	all-same	Aldo/keto reductases, related to diketogulonate reductase	1.1.1.274		3	1, 2, 3
0	0	lit-s	all-same	FIG00613320: hypothetical protein			1	2, 3
0	0	gs-sh	majority	Methylase involved in ubiquinone/menaquinone biosynthesis			3	2, 3
gs-sh	gs-sh	map	all-same	Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)	3.2.1.-		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	hydroxyacylglutathione hydrolase	3.1.2.6		3	1, 2, 3
0	0	base_ec	majority	RNase HI (EC 3.1.26.4)	3.1.26.4		3	2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_ec	base_ec	base_ec	all-same	DNA polymerase III, epsilon subunit, Proteobacterial	2.7.7.7		3	1, 2, 3
base_one HP	base_lit-s	base_one HP	all-same	putative aminopeptidase			2	1, 3
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
base_one miss	0	base_one miss	man-rest	MANUAL-REST			2	
orth	0	0	majority	Predicted amidohydrolase			3	1, 2
gs-sh	orth	tf_idf	all-same	Inhibitor of vertebrate lysozyme (Ivy).			3	1, 2, 3
0	lit-s	0	majority	Acyl-CoA dehydrogenases	1.3.99.-		3	1, 3
base_lit-s	orth	orth	all-same	phosphoheptose isomerase	5.3.1.28,5.3.1.-		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			2	
lit-s	lit-s	base_lit-s	all-same	Predicted glutamine amidotransferase			3	1, 2, 3
gs-sh	0	0	majority	addiction module toxin component, YafQ family/addiction module toxin, RelE/StbE family			3	1, 2
gs-sh	map	orth	all-same	addiction module antitoxin, RelB/DinJ family			3	1, 2, 3
base_both miss	base_one HP	base_one HP	all-hp	hypothetical protein	HP		0	
base_one HP	base_one HP	gs-sh	all-same	Cell wall-associated hydrolases (invasion-associated proteins)			2	2, 3
base_one HP	base_one HP	base_lit-s	all-same	Transposase and inactivated derivatives			2	2, 3
0	0	lit-s	majority	Flagellar biosynthesis pathway, component FlhA			3	2, 3
gs-sh	gs-sh	gs-sh	all-same	Flagellar motor protein			3	1, 2, 3
base_ec	base_lit-s	base_ec	all-same	Nucleotidyltransferase/DNA polymerase involved in DNA repair	2.7.7.7		3	1, 2, 3
gs-sh	lit-s	map	all-same	Antitoxin of toxin-antitoxin stability system			3	1, 2, 3
gs-sh	gs-sh	map	all-same	Toxin YafO, type II toxin-antitoxin system.			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	majority	Protein with similarity to RtcB			1	
base_lit-s	orth	orth	all-same	putative peptide chain release factor H			3	1, 2, 3
gs-sh	tf_idf	map	all-same	Xaa-His dipeptidase (EC:3.4.13.3). Metallo peptidase. MEROPS family M20C	3.4.13.-		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins	2.4.2.22		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			2	
gs-sh	0	0	majority	Transcriptional regulator Crl.			3	1, 2
gs-sh	orth	map	all-same	Outer membrane protein (porin)			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	glutamate 5-kinase (EC 2.7.2.11)	2.7.2.11		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41)	1.2.1.41		3	1, 2, 3
gs-sh	0	0	all-same	YpjF toxin protein			2	1, 2
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	majority	Uncharacterized protein YeeT			1	
base_one HP	base_one HP	lit-s	all-same	DNA repair protein radc			2	2, 3
0	0	gs-sh	majority	Antirestriction protein.			3	2, 3
base_one HP	base_one HP	0	majority	Putative cytoplasmic protein			1	
lit-s	base_one HP	base_one HP	all-same	Intergenic-region protein			1	1, 2
base_one HP	base_one HP	0	majority	Predicted transcriptional regulator			1	
base_one miss	0	base_one miss	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	lit-s	all-same	FIG01224161: hypothetical protein			0	2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	gs-sh	gs-sh	all-same	Transcriptional regulator			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
orth	0	0	majority	Retron-type reverse transcriptase			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_ec	base_ec	base_ec	all-same	homocysteine S-methyltransferase (EC 2.1.1.10)	2.1.1.10		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_one miss	base_both miss	base_one miss	majority	Transposase and inactivated derivatives			1	
orth	0	0	majority	Transposase and inactivated derivatives			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	base_ec	all-same	Dihydrodipicolinate synthase/N-acetylneuraminate lyase	4.2.1.52		2	2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	gs-sh	map	all-same	sugar (Glycoside-Pentoside-Hexuronide) transporter			3	1, 2, 3
base_ec	base_ec	base_lit-s	all-same	Beta-xylosidase	3.2.1.37		3	1, 2, 3
gs-sh	gs-sh	lit-s	all-same	transcriptional regulator, IclR family			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	ornithine carbamoyltransferase (EC 2.1.3.3)	2.1.3.3		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one miss	base_both miss	base_one miss	majority	Transposase and inactivated derivatives			1	
base_one HP	0	base_one HP	majority	FIG00640257: hypothetical protein			1	
base_one HP	lit-s	base_one HP	all-same	hypothetical protein			0	1, 3
0	0	0	man-rest	MANUAL-REST			3	
lit-s	base_one HP	base_one HP	all-same	FIG00639014: hypothetical protein			0	1, 2
lit-s	lit-s	base_lit-s	all-same	hypothetical protein			0	1, 2, 3
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
0	orth	0	majority	Site-specific recombinase XerD			3	1, 3
base_one miss	base_one miss	base_lit-s	all-same	Transcriptional regulator			2	2, 3
gs-sh	0	0	majority	Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs			3	1, 2
gs-sh	0	0	majority	Predicted periplasmic/secreted protein			3	1, 2
lit-s	0	0	majority	Gram-negative pili assembly chaperone, N-terminal domain.			3	1, 2
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
lit-s	base_one HP	base_one HP	all-same	CFA/I fimbrial subunit C usher protein			1	1, 2
lit-s	base_one HP	base_one HP	all-same	CFA/I fimbrial auxiliary subunit			1	1, 2
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
gs-sh	0	0	majority	DNA-binding HTH domain-containing proteins			3	1, 2
base_tigr	0	0	majority	LSU ribosomal protein L31P			3	1, 2
base_one HP	base_one HP	0	majority	Putative adhesin			1	
lit-s	0	0	majority	Transposase.			3	1, 2
pfam-sh	map	tf_idf	all-same	transcriptional regulator, AraC family			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	orth	orth	all-same	Predicted membrane protein			3	1, 2, 3
base_one HP	lit-s	base_one HP	all-same	hypothetical protein			0	1, 3
0	0	0	man-rest	MANUAL-REST			3	
pfam-sh	gs-sh	gs-sh	all-same	transcriptional regulator, AraC family			3	1, 2, 3
base_one HP	lit-s	base_one HP	all-same	hypothetical protein			0	1, 3
0	0	0	man-rest	MANUAL-REST			3	
base_lit-s	0	0	majority	iron-sulfur cluster-binding protein			3	1, 2
base_one HP	base_one HP	0	majority	"Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG"			1	
lit-s	0	0	all-same	G-rich domain on putative tyrosine kinase.			2	1, 2
base_tigr	base_ec	base_ec	all-same	choline dehydrogenase (EC 1.1.99.1)	1.1.99.1		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	betaine aldehyde dehydrogenase (EC 1.2.1.8)	1.2.1.8		3	1, 2, 3
base_tigr	gs-sh	orth	all-same	transcriptional regulator, TetR family			3	1, 2, 3
base_tigr	0	0	majority	choline/carnitine/betaine transport			3	1, 2
gs-sh	0	0	all-same	FOG: EAL domain			2	1, 2
gs-sh	gs-sh	gs-sh	all-same	Transcriptional regulator			3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00638603: hypothetical protein			0	2, 3
lit-s	0	0	majority	FOG: Ankyrin repeat			3	1, 2
base_one HP	base_one HP	base_both miss	all-hp	hypothetical protein	HP		0	
base_one HP	base_one HP	lit-s	all-same	FIG00637989: hypothetical protein			0	2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	majority	Putative cytoplasmic protein			1	
lit-s	base_one HP	base_one HP	all-same	FIG00639198: hypothetical protein			0	1, 2
base_ec	base_ec	base_ec	all-same	carbamate kinase (EC 2.7.2.2)	2.7.2.2		3	1, 2, 3
0	orth	0	majority	Cytosine deaminase and related metal-dependent hydrolases			3	1, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
lit-s	base_one HP	base_one HP	all-same	FIG00638728: hypothetical protein			0	1, 2
base_one HP	lit-s	base_one HP	all-same	hypothetical protein			0	1, 3
base_tigr	0	0	majority	The Resistance to Homoserine/Threonine (RhtB) Family protein			3	1, 2
base_one HP	base_one HP	lit-s	all-same	FIG00639237: hypothetical protein			0	2, 3
base_lit-s	lit-s	lit-s	all-same	propionate catabolism operon regulatory protein PrpR			3	1, 2, 3
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
base_tigr	base_ec	base_ec	all-same	methylisocitrate lyase (EC 4.1.3.30)	4.1.3.30		3	1, 2, 3
base_tigr	map	base_ec	all-same	2-methylcitrate synthase (EC 2.3.3.5)	2.3.3.5		3	1, 2, 3
base_tigr	base_lit-s	base_ec	all-same	2-methylcitrate dehydratase (EC 4.2.1.79)	4.2.1.79		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	propionyl-CoA synthetase (EC 6.2.1.17)	6.2.1.17		3	1, 2, 3
gs-sh	map	lit-s	all-same	Purine-cytosine permease and related proteins			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Cytosine deaminase and related metal-dependent hydrolases	3.5.4.1		3	1, 2, 3
gs-sh	orth	map	all-same	Transcriptional regulator			3	1, 2, 3
base_ec	base_ec	base_lit-s	all-same	Carbonic anhydrase	4.2.1.1		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	cyanate hydratase	4.2.1.104		3	1, 2, 3
base_tigr	0	0	majority	cyanate transporter			3	1, 2
base_ec	base_ec	base_ec	all-same	Acetyltransferase (isoleucine patch superfamily)	2.3.1.18		3	1, 2, 3
gs-sh	lit-s	map	all-same	oligosaccharide:H+ symporter			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Beta-galactosidase/beta-glucuronidase	3.2.1.23		3	1, 2, 3
gs-sh	tf_idf	map	all-same	transcriptional regulator, LacI family			3	1, 2, 3
gs-sh	map	orth	all-same	transcriptional regulator, IclR family			3	1, 2, 3
base_ec-d	orth	0	majority	3-hydroxyphenylpropionate hydroxylase	1.14.13.127		3	1, 3
base_ec	base_ec	base_ec	all-same	2,3-dihydroxyphenylpropionate 1,2-dioxygenase (EC 1.13.11.16)	1.13.11.16		3	1, 2, 3
gs-sh	gs-sh	map	all-same	2-hydroxy-6-ketonona-2,4-dienedioate hydrolase (EC 3.7.1.-)	3.7.1.-		3	1, 2, 3
base_ec	base_lit-s	base_ec	all-same	2-keto-4-pentenoate hydratase (EC 4.2.1.80)	4.2.1.80		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	acetaldehyde dehydrogenase (EC 1.2.1.10)	1.2.1.10		3	1, 2, 3
base_tigr	base_lit-s	base_ec	all-same	4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39)	4.1.3.39		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	majority	Nucleoprotein/polynucleotide-associated enzyme			1	
base_lit-s	base_lit-s	base_lit-s	all-same	S-formylglutathione hydrolase	3.1.2.12		3	1, 2, 3
base_lit-s	base_ec	base_ec-d	all-same	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	1.1.1.284, 1.1.1.1		3	1, 2, 3
gs-sh	0	0	all-same	FrmR: Negative transcriptional regulator of formaldehyde detoxification operon			2	1, 2
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			2	
base_lit-s	gs-sh	gs-sh	all-same	taurine ABC transporter, periplasmic binding protein			3	1, 2, 3
0	0	gs-sh	majority	ABC-type taurine transport system, ATPase component	3.6.3.36		3	2, 3
0	0	gs-sh	majority	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component			3	2, 3
base_ec	base_ec	base_ec	all-same	Probable taurine catabolism dioxygenase	1.14.11.17		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	porphobilinogen synthase (EC 4.2.1.24)	4.2.1.24		3	1, 2, 3
base_one miss	lit-s	base_one miss	all-same	FIG00640177: hypothetical protein			0	1, 3
lit-s	base_one HP	base_one HP	all-same	Putative flagellin structural protein			1	1, 2
0	0	0	man-rest	MANUAL-REST			3	
lit-s	0	0	majority	Transposase.			3	1, 2
base_tigr	0	0	majority	outer membrane autotransporter barrel domain			3	1, 2
base_one HP	0	base_one HP	majority	FIG00637869: hypothetical protein			1	
0	0	0	man-rest	MANUAL-REST			3	
base_one miss	0	base_one miss	majority	FIG00638822: hypothetical protein			1	
gs-sh	lit-s	map	all-same	ABC-type long-chain fatty acid transport system, fused permease and ATPase components			3	1, 2, 3
base_one HP	base_one HP	0	majority	putative lipoprotein			1	
gs-sh	orth	0	all-same	Putative inner membrane protein			2	1, 2, 3
base_one HP	base_one HP	gs-sh	all-same	membrane protein yaiZ			1	2, 3
base_ec	base_lit-s	base_ec	all-same	D-alanine--D-alanine ligase (EC 6.3.2.4)	6.3.2.4		3	1, 2, 3
gs-sh	0	0	majority	Sigma-S stabilisation anti-adaptor protein.			3	1, 2
base_ec	base_ec	base_ec	all-same	alkaline phosphatase (EC 3.1.3.1)	3.1.3.1		3	1, 2, 3
gs-sh	lit-s	map	all-same	psiF repeat.			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	base_ec	base_ec	all-same	pyrroline-5-carboxylate reductase (EC 1.5.1.2)	1.5.1.2		3	1, 2, 3
base_one HP	base_one HP	0	majority	Protein YaiI			1	
base_ec	base_ec	base_ec	all-same	shikimate kinase (EC 2.7.1.71)	2.7.1.71		3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	Protein YaiA			1	1, 2
lit-s	lit-s	lit-s	all-same	AroM protein.			3	1, 2, 3
base_one HP	base_one HP	0	majority	Cytoplasmic protein YaiE			1	
base_one HP	base_one HP	base_one miss	majority	Protein YkiA			1	
gs-sh	gs-sh	base_lit-s	all-same	DNA recombination-dependent growth factor C			3	1, 2, 3
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
gs-sh	gs-sh	gs-sh	all-same	Arabinose efflux permease			3	1, 2, 3
gs-sh	gs-sh	lit-s	all-same	exonuclease SbcC			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Exodeoxyribonuclease I subunit D	3.1.11.1		3	1, 2, 3
base_lit-s	tf_idf	tf_idf	all-same	phosphate regulon transcriptional regulatory protein PhoB			3	1, 2, 3
base_tigr	map	base_ec	all-same	PAS/PAC sensor signal transduction histidine kinase (EC 2.7.13.3)	2.7.13.3		3	1, 2, 3
base_tigr	orth	tf_idf	all-same	branched-chain amino acid uptake carrier			3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	proline:proton symporter, AAT family (TC 2.A.3.1.6)			3	1, 2, 3
0	0	base_ec	majority	Glycosidases	3.2.1.20		3	2, 3
base_one HP	base_one HP	base_ec	all-same	Acyl carrier protein phosphodiesterase	3.1.4.14		1	2, 3
base_tigr	gs-sh	base_lit-s	all-same	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	5.-		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	tRNA-guanine transglycosylase (EC 2.4.2.29)	2.4.2.29		3	1, 2, 3
base_tigr	lit-s	gs-sh	all-same	protein translocase subunit yajC			3	1, 2, 3
gs-sh	0	0	majority	protein-export membrane protein, SecD/SecF family			3	1, 2
lit-s	gs-sh	gs-sh	all-same	protein translocase subunit secF			3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	HNH endonuclease.			2	1, 2
gs-sh	tf_idf	map	all-same	Nucleoside-binding outer membrane protein			3	1, 2, 3
base_one HP	base_one HP	gs-sh	all-same	Hypothetical lipoprotein yajI			1	2, 3
base_lit-s	gs-sh	map	all-same	transcriptional regulator NrdR			3	1, 2, 3
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
base_tigr	lit-s	base_ec	all-same	6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78)	2.5.1.78		3	1, 2, 3
base_tigr	pfam-sh	pfam-sh	all-same	NusB antitermination factor			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	thiamine-phosphate kinase	2.7.4.16		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Phosphatidylglycerophosphatase A and related proteins	3.1.3.27		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	base_ec	base_ec	all-same	1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)	2.2.1.7		3	1, 2, 3
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
base_tigr	base_ec	base_ec	all-same	Exodeoxyribonuclease VII small subunit (EC 3.1.11.6)	3.1.11.6		3	1, 2, 3
base_tigr	pfam-sh	gs-sh	all-same	[ThiS-adenylate] sulfurtransferase			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	DJ-1 family protein			3	1, 2, 3
base_ec	base_lit-s	base_ec	all-same	ketopantoate reductase (EC 1.1.1.169)	1.1.1.169		3	1, 2, 3
base_one HP	base_one HP	0	majority	FIG001943: hypothetical protein YajQ			1	
gs-sh	orth	map	all-same	Arabinose efflux permease			3	1, 2, 3
base_lit-s	0	0	majority	protoheme IX farnesyltransferase	2.5.1.-		3	1, 2
base_tigr	lit-s	map	all-same	cytochrome bo3 quinol oxidase subunit 4	1.10.3.-		3	1, 2, 3
base_tigr	lit-s	map	all-same	cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-)	1.10.3.-		3	1, 2, 3
base_tigr	lit-s	map	all-same	cytochrome bo3 quinol oxidase subunit 1 apoprotein (EC 1.10.3.-)	1.10.3.-		3	1, 2, 3
base_tigr	gs-sh	map	all-same	cytochrome bo3 quinol oxidase subunit 2 (EC 1.10.3.-)	1.10.3.-		3	1, 2, 3
gs-sh	gs-sh	map	all-same	AmpG-related permease			3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
pfam-sh	pfam-sh	pfam-sh	all-same	transcriptional regulator, BolA protein family			3	1, 2, 3
base_one miss	lit-s	base_one miss	all-same	FIG00637934: hypothetical protein			0	1, 3
base_lit-s	base_ec	tf_idf	all-same	trigger factor			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92)	3.4.21.92		3	1, 2, 3
base_tigr	lit-s	base_lit-s	all-same	ATP-dependent Clp protease ATP-binding subunit ClpX	3.4.21.92		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	ATP-dependent proteinase. Serine peptidase. MEROPS family S16	3.4.21.53		3	1, 2, 3
gs-sh	base_lit-s	map	all-same	bacterial nucleoid protein HU beta subunit			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Parvulin-like peptidyl-prolyl isomerase	5.2.1.8		3	1, 2, 3
base_tigr	0	0	majority	competence protein ComEA helix-hairpin-helix repeat region			3	1, 2
gs-sh	0	0	majority	acyl-CoA thioester hydrolase, YbgC/YbaW family	3.1.2.-		3	1, 2
base_tigr	0	0	majority	preQ(0) biosynthesis protein QueC			3	1, 2
0	0	gs-sh	majority	ABC-type uncharacterized transport system, periplasmic component			3	2, 3
gs-sh	0	0	majority	HAD-superfamily hydrolase, subfamily IIB	3.6.1.-		3	1, 2
gs-sh	gs-sh	gs-sh	all-same	transcriptional regulator, AsnC family			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	lit-s	gs-sh	all-same	ABC-type multidrug transport system, ATPase and permease components			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	nitrogen regulatory protein P-II family			3	1, 2, 3
gs-sh	gs-sh	lit-s	all-same	ammonium transporter (TC 1.A.11)			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	acyl-CoA thioesterase II	3.1.2.-		3	1, 2, 3
base_one HP	base_one HP	0	majority	Glycoprotein-polysaccharide metabolism			1	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	gs-sh	all-same	RNA signal recognition particle 4.5S RNA			1	2, 3
pfam-sh	orth	gs-sh	all-same	Predicted signal transduction protein containing sensor and EAL domains			3	1, 2, 3
gs-sh	orth	map	all-same	sigma70 family sigma factor YlaC.			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Acetyltransferase (isoleucine patch superfamily)	2.3.1.79		3	1, 2, 3
gs-sh	orth	lit-s	all-same	Haemolysin expression modulating protein.			3	1, 2, 3
lit-s	0	0	all-same	Biofilm formation regulator YbaJ.			2	1, 2
gs-sh	0	0	majority	The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	RND family efflux transporter, MFP subunit			3	1, 2, 3
gs-sh	gs-sh	pfam-sh	all-same	transcriptional regulator, TetR family			3	1, 2, 3
gs-sh	0	0	majority	Small-conductance mechanosensitive channel			3	1, 2
base_one HP	base_one HP	0	majority	Putative inner membrane protein			1	
gs-sh	0	0	majority	restart primosome assembly protein PriC			3	1, 2
gs-sh	0	0	all-same	FIG039061: hypothetical protein related to heme utilization			2	1, 2
base_tigr	base_ec	base_ec	all-same	adenine phosphoribosyltransferase (EC 2.4.2.7)	2.4.2.7		3	1, 2, 3
base_tigr	base_ec	base_ec-d	all-same	DNA polymerase III, gamma subunit/DNA polymerase III, tau subunit	2.7.7.7,2.7.7.7, 2.7.7.7		3	1, 2, 3
base_lit-s	map	gs-sh	all-same	DNA-binding protein, YbaB/EbfC family			3	1, 2, 3
base_tigr	lit-s	pfam-sh	all-same	DNA replication and repair protein RecR			3	1, 2, 3
pfam-sh	map	gs-sh	all-same	Molecular chaperone, HSP90 family			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Adenylate kinase (EC 2.7.4.3)	2.7.4.3		3	1, 2, 3
gs-sh	lit-s	map	all-same	Esterase/lipase	3.1.1.-		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	ferrochelatase (EC 4.99.1.1)	4.99.1.1		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	inosine-guanosine kinase (EC 2.7.1.73)	2.7.1.73		3	1, 2, 3
gs-sh	0	0	majority	Kef-type potassium/proton antiporter, CPA2 family (TC 2.A.37.1)			3	1, 2
gs-sh	lit-s	map	all-same	Nitrate/nitrite transporter			3	1, 2, 3
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
gs-sh	gs-sh	gs-sh	all-same	Cys-tRNA(Pro) hydrolase	3.1.1.-		3	1, 2, 3
gs-sh	0	lit-s	all-same	FIG01199637: hypothetical protein			1	1, 2, 3
base_lit-s	gs-sh	gs-sh	all-same	addiction module antidote protein, HigA family			3	1, 2, 3
base_ec	base_ec-d	base_ec-d	majority	copper-(or silver)-translocating P-type ATPase	3.6.3.4		3	1, 2
base_tigr	base_ec	base_ec	all-same	L-glutaminase (EC 3.5.1.2)	3.5.1.2		3	1, 2, 3
gs-sh	lit-s	map	all-same	amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	Cu(I)-responsive transcriptional regulator			3	1, 2, 3
gs-sh	0	0	majority	Membrane protein implicated in regulation of membrane protease activity			3	1, 2
gs-sh	0	0	majority	SPFH domain, Band 7 family protein			3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	0	majority	YbbM seven transmembrane helix protein			1	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	all-same	Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component			2	1, 2
lit-s	0	0	majority	RHS repeat-associated core domain			3	1, 2
lit-s	base_one HP	base_one HP	all-same	FIG00637923: hypothetical protein			0	1, 2
base_tigr	0	0	majority	RHS repeat-associated core domain			3	1, 2
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
0	base_one HP	base_one HP	man-rest	MANUAL-REST			2	
base_tigr	gs-sh	gs-sh	all-same	tRNA 2-selenouridine synthase (EC 2.9.1.-)	2.9.1.-		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Transcriptional regulator			3	1, 2, 3
base_ec	base_ec	base_lit-s	all-same	Ureidoglycolate hydrolase	3.5.3.19		3	1, 2, 3
gs-sh	map	orth	all-same	transcriptional regulator, IclR family			3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	glyoxylate carboligase	4.1.1.47		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	hydroxypyruvate isomerase	5.3.1.22		3	1, 2, 3
base_lit-s	base_lit-s	base_lit-s	all-same	2-hydroxy-3-oxopropionate reductase	1.1.1.60		3	1, 2, 3
orth	lit-s	map	all-same	NCS1 nucleoside transporter family			3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	allantoinase	3.5.2.5		3	1, 2, 3
gs-sh	orth	orth	all-same	Xanthine/uracil permeases			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	glycerate kinase	2.7.1.31		3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_lit-s	base_ec	base_ec	all-same	allantoate amidohydrolase	3.5.3.9		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	ureidoglycolate dehydrogenase	1.1.1.154		3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	Succinyl-CoA synthetase, alpha subunit			3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	Putative cytoplasmic protein			1	1, 2
base_one HP	base_one HP	0	majority	Putative cytoplasmic protein			1	
base_one HP	base_one HP	0	majority	Putative cytoplasmic protein			1	
base_tigr	base_ec	base_ec	all-same	carbamate kinase (EC 2.7.2.2)	2.7.2.2		3	1, 2, 3
base_tigr	base_ec	base_ec-d	all-same	5-(carboxyamino)imidazole ribonucleotide synthase	6.3.4.18		3	1, 2, 3
base_ec	base_ec-d	base_ec-d	majority	5-(carboxyamino)imidazole ribonucleotide mutase	5.4.99.18		3	1, 2
base_tigr	lit-s	lit-s	all-same	UDP-2,3-diacylglucosamine hydrolase (EC 3.6.1.54)	3.6.1.54		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family	5.2.1.8		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	cysteinyl-tRNA synthetase (EC 6.1.1.16)	6.1.1.16		3	1, 2, 3
gs-sh	orth	lit-s	all-same	Predicted membrane-bound metal-dependent hydrolases			3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG002958: hypothetical protein			0	2, 3
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	P pilus assembly protein, pilin FimA			3	1, 2
gs-sh	0	0	majority	P pilus assembly protein, chaperone PapD			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	two component transcriptional regulator, LuxR family			3	1, 2
base_one miss	lit-s	base_one miss	all-same	FIG00639671: hypothetical protein			0	1, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_ec	base_one HP	all-same	Phage exonuclease; Putative phage-encoded enzyme involved in integration-recombination	3.1.11.3		2	1, 3
base_one miss	0	base_one miss	man-rest	MANUAL-REST			2	
lit-s	0	0	majority	Transposase.			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	gs-sh	gs-sh	all-same	Membrane transporters of cations and cationic drugs			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			2	
base_one miss	base_both miss	base_one miss	majority	Raf kinase inhibitor-like protein, YbhB/YbcL family			1	
pfam-sh	pfam-sh	pfam-sh	all-same	AraC-type DNA-binding domain-containing proteins			3	1, 2, 3
base_one HP	0	base_one HP	majority	FIG00638895: hypothetical protein			1	
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
base_one HP	base_one HP	lit-s	all-same	FIG00639062: hypothetical protein			0	2, 3
base_ec	gs-sh	gs-sh	all-same	Holliday junction resolvase	3.1.22.4		3	1, 2, 3
lit-s	lit-s	lit-s	all-same	Phage antitermination protein Q.			3	1, 2, 3
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	Outer membrane protein (porin)			3	1, 2
lit-s	0	0	majority	Lysis protein S.			3	1, 2
map	lit-s	base_ec	all-same	Phage-related lysozyme (muraminidase)	3.2.1.17		3	1, 2, 3
lit-s	0	0	majority	Bacteriophage lysis protein.	3.4.-		3	1, 2
gs-sh	lit-s	map	all-same	Bor protein.			3	1, 2, 3
base_one miss	base_both miss	base_one miss	majority	Phage envelope protein			1	
lit-s	base_one HP	base_one HP	all-same	FIG00638683: hypothetical protein			0	1, 2
0	lit-s	0	majority	Phage DNA packaging protein, Nu1 subunit of terminase			3	1, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
lit-s	0	0	majority	Caudovirales tail fibre assembly protein.			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	transcriptional regulator, AraC family			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Outer membrane protease	3.4.23.49		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	transcriptional regulator, AraC family			3	1, 2, 3
base_one HP	0	base_one HP	majority	FIG00638135: hypothetical protein			1	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_ec	0	0	majority	heavy metal sensor kinase	2.7.13.3		3	1, 2
gs-sh	0	0	majority	heavy metal response regulator			3	1, 2
base_one miss	base_one HP	base_one HP	all-hp	hypothetical protein	HP		0	
gs-sh	orth	map	all-same	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family			3	1, 2, 3
gs-sh	0	0	all-same	Cation efflux system protein CusF precursor			2	1, 2
gs-sh	0	0	majority	RND family efflux transporter, MFP subunit			3	1, 2
gs-sh	0	0	majority	heavy metal efflux pump (cobalt-zinc-cadmium)			3	1, 2
gs-sh	lit-s	map	all-same	phenylalanine:proton symporter, AAT family (TC 2.A.3.1.1)			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Small-conductance mechanosensitive channel			3	1, 2, 3
gs-sh	tf_idf	map	all-same	Nitroreductase	1.-, 1.5.1.34		3	1, 2, 3
base_one HP	base_one HP	0	majority	Putative cytoplasmic protein			1	
base_one HP	base_one HP	0	majority	Putative inner membrane protein			1	
lit-s	0	0	all-same	carboxylate-amine ligase, YbdK family	6.3.-		2	1, 2
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
lit-s	orth	map	all-same	Hok/gef family.			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	gs-sh	pfam-sh	all-same	TonB-dependent siderophore receptor			3	1, 2, 3
lit-s	0	0	majority	Enterochelin esterase and related enzymes			3	1, 2
gs-sh	0	0	all-same	FIG005032: Putative cytoplasmic protein YbdZ in enterobactin biosynthesis operon			2	1, 2
gs-sh	0	0	majority	amino acid adenylation domain	2.7.7.-		3	1, 2
0	0	gs-sh	majority	ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components	3.6.3.34		3	2, 3
gs-sh	0	0	majority	Chain length determinant protein			3	1, 2
gs-sh	orth	map	all-same	ABC-type enterobactin transport system, permease component			3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	ABC-type Fe3+-siderophore transport system, permease component			3	1, 2, 3
gs-sh	lit-s	map	all-same	Arabinose efflux permease			3	1, 2, 3
gs-sh	0	0	majority	ABC-type Fe2+-enterobactin transport system, periplasmic component			3	1, 2
base_ec	base_ec	base_ec	all-same	isochorismate synthase (EC 5.4.4.2)	5.4.4.2		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	2,3-dihydroxybenzoate-AMP ligase	2.7.7.58		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Isochorismate hydrolase	3.3.2.1		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	1.3.1.28		3	1, 2, 3
gs-sh	0	0	majority	uncharacterized domain 1			3	1, 2
gs-sh	lit-s	orth	all-same	Carbon starvation protein, predicted membrane protein			3	1, 2, 3
base_one HP	base_one HP	gs-sh	all-same	Uncharacterized small protein			2	2, 3
0	0	lit-s	majority	Glycerol dehydrogenase and related enzymes	1.1.-		3	2, 3
gs-sh	0	0	majority	Aspartate/tyrosine/aromatic aminotransferase	2.6.1.-		3	1, 2
gs-sh	0	0	majority	Predicted transcriptional regulators			3	1, 2
base_one HP	base_one HP	orth	all-same	Predicted phosphoadenosine phosphosulfate sulfotransferase			2	2, 3
gs-sh	gs-sh	gs-sh	all-same	Transcriptional regulator			3	1, 2, 3
0	0	tf_idf	majority	Thiol:disulfide interchange protein DsbC			3	2, 3
base_lit-s	gs-sh	map	all-same	peroxiredoxin	1.11.1.15		3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	alkyl hydroperoxide reductase, F subunit			3	1, 2, 3
gs-sh	lit-s	tf_idf	all-same	Universal stress protein UspA and related nucleotide-binding proteins			3	1, 2, 3
0	0	gs-sh	majority	glutathione-independent formaldehyde dehydrogenase			3	2, 3
lit-s	base_one HP	base_one HP	all-same	FIG00639549: hypothetical protein			0	1, 2
gs-sh	gs-sh	orth	all-same	Transcription elongation factor			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Ribonuclease I	3.1.27.6		3	1, 2, 3
gs-sh	0	0	majority	anion transporter			3	1, 2
base_lit-s	base_ec	base_ec	all-same	triphosphoribosyl-dephospho-CoA synthase CitG	2.7.8.25		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	holo-ACP synthase CitX	2.7.7.61		3	1, 2, 3
base_lit-s	base_ec-d	base_ec-d	majority	citrate lyase, alpha subunit	2.8.3.10, 4.1.3.6		3	1, 2
base_tigr	base_ec	base_ec-d	all-same	citrate lyase, beta subunit	4.1.3.34, 4.1.3.6		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	citrate lyase acyl carrier protein	4.1.3.6		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	[citrate (pro-3S)-lyase] ligase	6.2.1.22		3	1, 2, 3
base_ec	gs-sh	gs-sh	all-same	Signal transduction histidine kinase regulating citrate/malate metabolism	2.7.13.3		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Response regulator of citrate/malate metabolism			3	1, 2, 3
base_tigr	tf_idf	map	all-same	c4-dicarboxylate anaerobic carrier family protein			3	1, 2, 3
lit-s	pfam-sh	pfam-sh	all-same	Antimicrobial peptide resistance and lipid A acylation PagP	2.3.1.-		3	1, 2, 3
gs-sh	0	0	majority	cold shock protein E (CspE)			3	1, 2
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
gs-sh	lit-s	gs-sh	all-same	camphor resistance protein CrcB			3	1, 2, 3
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
0	lit-s	0	majority	Predicted amidohydrolase			3	1, 3
base_tigr	0	0	majority	Sec-independent protein translocase TatE			3	1, 2
base_tigr	gs-sh	lit-s	all-same	lipoate synthase	2.8.1.8		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Transcriptional regulator			3	1, 2, 3
base_tigr	0	0	majority	lipoate-protein ligase B	2.3.1.181		3	1, 2
base_one HP	base_one HP	0	majority	Proposed lipoate regulatory protein YbeD			1	
base_ec-d	base_ec-d	base_ec	majority	penicillin-binding protein 6. Serine peptidase. MEROPS family S11	3.4.16.4		3	2, 3
base_lit-s	gs-sh	tf_idf	all-same	rare lipoprotein A			3	1, 2, 3
base_tigr	gs-sh	map	all-same	cell elongation-specific peptidoglycan biosynthesis regulator RodA			3	1, 2, 3
base_lit-s	tf_idf	tf_idf	all-same	penicillin-binding protein 2			3	1, 2, 3
base_tigr	0	0	majority	23S rRNA (pseudouridine-1915-N(3)-) methyltransferase	2.1.1.177		3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_lit-s	base_ec	base_ec	all-same	alpha-ribazole phosphatase	3.1.3.73		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	2.7.7.18		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	DNA polymerase III, delta subunit (EC 2.7.7.7)	2.7.7.7		3	1, 2, 3
gs-sh	map	tf_idf	all-same	Rare lipoprotein B			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	leucyl-tRNA synthetase (EC 6.1.1.4)	6.1.1.4		3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	COG2433: Uncharacterized conserved protein			0	2, 3
0	0	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	0	majority	Uncharacterized protein YbeR			1	
lit-s	0	0	all-same	DnaJ domain.			2	1, 2
lit-s	0	0	all-same	Sel1 repeat.			2	1, 2
base_one HP	base_one HP	lit-s	all-same	FIG00637867: hypothetical protein			0	2, 3
base_one HP	0	base_one HP	majority	FIG00638911: hypothetical protein			1	
0	0	gs-sh	majority	Molecular chaperone			3	2, 3
gs-sh	orth	orth	all-same	Inosine-uridine nucleoside N-ribohydrolase	3.2.-		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	0	0	majority	L-glutamate ABC transporter membrane protein/L-aspartate ABC transporter membrane protein			3	1, 2
base_tigr	0	0	majority	L-glutamate ABC transporter membrane protein/L-aspartate ABC transporter membrane protein			3	1, 2
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
gs-sh	0	0	majority	L-glutamate-binding protein/L-aspartate-binding protein			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	0	0	majority	Apolipoprotein N-acyltransferase	2.3.1.-		3	1, 2
gs-sh	lit-s	gs-sh	all-same	Putative Mg2+ and Co2+ transporter CorC			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	metalloprotein, YbeY/UPF0054 family			3	1, 2, 3
gs-sh	gs-sh	pfam-sh	all-same	Phosphate starvation-inducible protein PhoH, predicted ATPase			3	1, 2, 3
base_lit-s	gs-sh	gs-sh	all-same	tRNA-i(6)A37 thiotransferase enzyme MiaB			3	1, 2, 3
gs-sh	lit-s	map	all-same	Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family	1.14.13.-		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4)	6.3.5.4		3	1, 2, 3
base_one miss	base_lit-s	base_one miss	all-same	putative lipoprotein			2	1, 3
pfam-sh	0	0	majority	Predicted sugar phosphatases of the HAD superfamily			3	1, 2
map	pfam-sh	gs-sh	all-same	N-acetylglucosamine repressor, NagC			3	1, 2, 3
base_tigr	base_lit-s	base_ec	all-same	N-acetylglucosamine 6-phosphate deacetylase (EC 3.5.1.25)	3.5.1.25		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	glucosamine-6-phosphate deaminase (EC 3.5.99.6)	3.5.99.6		3	1, 2, 3
gs-sh	base_ec-d	0	majority	PTS system N-acetylglucosamine-specific IIA component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2)			3	1, 2
base_tigr	base_ec	base_ec	all-same	glutaminyl-tRNA synthetase (EC 6.1.1.18)	6.1.1.18		3	1, 2, 3
lit-s	0	0	majority	outer membrane porin, OprD family.			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	YbfN-like lipoprotein.			3	1, 2, 3
gs-sh	orth	orth	all-same	Fe2+/Zn2+ uptake regulation proteins			3	1, 2, 3
base_tigr	orth	map	all-same	flavodoxin, long chain			3	1, 2, 3
lit-s	gs-sh	gs-sh	all-same	Ribbon-helix-helix protein, copG family.			3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)			3	1, 2, 3
gs-sh	orth	pfam-sh	all-same	negative regulator of replication initiation SeqA			3	1, 2, 3
base_both miss	base_one HP	base_one HP	all-hp	hypothetical protein	HP		0	
base_lit-s	base_ec	base_ec	all-same	phosphoglucomutase, alpha-D-glucose phosphate-specific	5.4.2.2		3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	Hypothetical lipoprotein ybfP precursor			1	1, 2
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
base_one HP	base_one HP	lit-s	all-same	FIG00638110: hypothetical protein			0	2, 3
gs-sh	gs-sh	gs-sh	all-same	putrescine:ornithine antiporter, APA family (TC 2.A.3.2.1)			3	1, 2, 3
gs-sh	map	base_ec	all-same	ornithine decarboxylase (EC 4.1.1.17)	4.1.1.17		3	1, 2, 3
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
gs-sh	orth	map	all-same	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain			3	1, 2, 3
base_ec	pfam-sh	gs-sh	all-same	Osmosensitive K+ channel histidine kinase	2.7.13.3		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	K+-transporting ATPase, C subunit	3.6.3.12		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	K+-transporting ATPase, B subunit	3.6.3.12		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	K+-transporting ATPase, KdpA	3.6.3.12		3	1, 2, 3
base_one miss	0	base_one miss	majority	FIG00637855: hypothetical protein			1	
base_one HP	base_one HP	0	majority	Putative exported protein			1	
gs-sh	0	0	majority	RHS repeat-associated core domain			3	1, 2
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
base_tigr	0	0	majority	RHS repeat-associated core domain			3	1, 2
lit-s	base_one HP	base_one HP	all-same	"orf, hypothetical protein"			1	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	Transposase			3	1, 2
gs-sh	0	0	majority	Transposase			3	1, 2
base_one HP	base_one HP	0	majority	FIG143828: Hypothetical protein YbgA			1	
base_ec	base_ec	base_ec	all-same	deoxyribodipyrimidine photo-lyase type I	4.1.99.3		3	1, 2, 3
gs-sh	0	0	majority	amino acid/peptide transporter (Peptide:H+ symporter), bacterial			3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_tigr	0	0	majority	membrane protein AbrB duplication			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	Formamidopyrimidine-DNA glycosylase	3.2.2.-, 4.2.99.18		3	1, 2, 3
lit-s	0	0	all-same	Fimbrial protein.			2	1, 2
gs-sh	0	0	majority	P pilus assembly protein, chaperone PapD			3	1, 2
0	0	gs-sh	majority	P pilus assembly protein, porin PapC			3	2, 3
0	0	gs-sh	majority	P pilus assembly protein, pilin FimA			3	2, 3
base_tigr	base_ec	base_ec	all-same	citrate synthase (EC 2.3.3.1)	2.3.3.1		3	1, 2, 3
base_tigr	gs-sh	map	all-same	succinate dehydrogenase subunit C	1.3.5.1		3	1, 2, 3
base_tigr	lit-s	map	all-same	succinate dehydrogenase subunit D	1.3.5.1		3	1, 2, 3
gs-sh	lit-s	base_ec-d	all-same	succinate dehydrogenase subunit A	1.3.99.1,1.3.5.1		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	succinate dehydrogenase and fumarate reductase iron-sulfur protein	1.3.99.1		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)	1.2.4.2		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61)	2.3.1.61		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	succinyl-CoA synthetase (ADP-forming) beta subunit (EC 6.2.1.5)	6.2.1.5		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	succinyl-CoA synthetase (ADP-forming) alpha subunit (EC 6.2.1.5)	6.2.1.5		3	1, 2, 3
gs-sh	0	0	majority	transcriptional regulator, GntR family			3	1, 2
gs-sh	0	0	majority	PTS system mannosylglycerate-specific IIA component, Fru family (TC 4.A.2.1.3)/PTS system mannosylglycerate-specific IIB component, Fru family (TC 4.A.2.1.3)/PTS system mannosylglycerate-specific IIC component, Fru family (TC 4.A.2.1.3)			3	1, 2
gs-sh	gs-sh	base_lit-s	all-same	Alpha-mannosidase	3.2.1.170		3	1, 2, 3
base_both miss	base_one miss	base_one miss	all-hp	hypothetical protein	HP		0	
gs-sh	gs-sh	map	all-same	cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein	1.10.3.-,1.10.3.10		3	1, 2, 3
base_tigr	lit-s	map	all-same	cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein	1.10.3.-,1.10.3.10		3	1, 2, 3
base_lit-s	0	0	majority	cyd operon protein YbgE			3	1, 2
base_lit-s	0	0	majority	tol-pal system-associated acyl-CoA thioesterase	3.1.2.-		3	1, 2
base_tigr	gs-sh	gs-sh	all-same	Cell division and transport-associated protein TolQ (TC 2.C.1.2.1)			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	Cell division and transport-associated protein TolR (TC 2.C.1.2.1)			3	1, 2, 3
base_tigr	lit-s	pfam-sh	all-same	Cell division and transport-associated protein TolA (TC 2.C.1.2.1)			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	tol-pal system beta propeller repeat protein TolB			3	1, 2, 3
base_lit-s	gs-sh	gs-sh	all-same	peptidoglycan-associated lipoprotein			3	1, 2, 3
base_lit-s	0	0	majority	tol-pal system protein YbgF			3	1, 2
base_tigr	base_ec	base_ec	all-same	quinolinate synthetase (EC 2.5.1.72)	2.5.1.72		3	1, 2, 3
gs-sh	lit-s	map	all-same	cation diffusion facilitator family transporter			3	1, 2, 3
gs-sh	gs-sh	map	all-same	nicotinamide mononucleotide transporter PnuC			3	1, 2, 3
lit-s	0	0	majority	YbgS-like protein.			3	1, 2
base_tigr	base_ec	base_ec	all-same	3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54)	2.5.1.54		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	phosphoglycerate mutase (EC 5.4.2.1)	5.4.2.1		3	1, 2, 3
base_tigr	gs-sh	base_ec	all-same	aldose 1-epimerase (EC 5.1.3.3)	5.1.3.3		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	galactokinase (EC 2.7.1.6)	2.7.1.6		3	1, 2, 3
base_tigr	base_ec	base_ec-d	all-same	UTP-hexose-1-phosphate uridylyltransferase/UDP-glucose-hexose-1-phosphate uridylyltransferase	2.7.7.12,2.7.7.10, 2.7.7.12		3	1, 2, 3
base_tigr	base_ec-d	base_ec-d	majority	UDP-galactose 4-epimerase (EC 5.1.3.2)	5.1.3.2		3	1, 2
0	0	gs-sh	majority	ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA			3	2, 3
gs-sh	gs-sh	gs-sh	all-same	molybdate transport repressor, ModE			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	molybdenum ABC transporter, periplasmic molybdate-binding protein			3	1, 2, 3
base_lit-s	gs-sh	map	all-same	molybdate ABC transporter, permease protein			3	1, 2, 3
base_ec	gs-sh	gs-sh	all-same	molybdenum ABC transporter, ATP-binding protein	3.6.3.29		3	1, 2, 3
gs-sh	0	0	majority	HAD-superfamily hydrolase, subfamily IIB			3	1, 2
0	0	base_ec	majority	3-carboxymuconate cyclase	3.1.1.31		3	2, 3
gs-sh	gs-sh	gs-sh	all-same	Transcriptional regulator			3	1, 2, 3
gs-sh	0	lit-s	all-same	FIG00637898: hypothetical protein			1	1, 2, 3
gs-sh	gs-sh	map	all-same	anion transporter			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			2	
gs-sh	gs-sh	base_ec	all-same	Pectin methylesterase	3.1.1.11		3	1, 2, 3
base_one HP	base_one HP	gs-sh	all-same	phospholipid-binding protein, PBP family			2	2, 3
base_lit-s	base_ec	base_ec	all-same	adenosylmethionine-8-amino-7-oxononanoate transaminase	2.6.1.62		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	biotin synthase (EC 2.8.1.6)	2.8.1.6		3	1, 2, 3
base_tigr	base_lit-s	base_ec	all-same	8-amino-7-oxononanoate synthase (EC 2.3.1.47)	2.3.1.47		3	1, 2, 3
base_ec	0	0	majority	pimeloyl-CoA biosynthesis protein BioC	2.1.1.197		3	1, 2
base_lit-s	base_ec	base_ec	all-same	dethiobiotin synthase	6.3.3.3		3	1, 2, 3
base_tigr	lit-s	base_lit-s	all-same	Excinuclease ABC subunit B			3	1, 2, 3
base_tigr	base_one HP	base_one HP	all-same	conserved hypothetical protein, cofD-related			1	1, 2
base_tigr	gs-sh	gs-sh	all-same	cyclic pyranopterin monophosphate synthase subunit MoaA	4.1.99.18		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	molybdenum cofactor biosynthesis protein B, proteobacterial			3	1, 2, 3
base_tigr	gs-sh	pfam-sh	all-same	cyclic pyranopterin monophosphate synthase subunit MoaC	4.1.99.18		3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	molybdopterin synthase subunit MoaD	2.8.1.12		3	1, 2, 3
gs-sh	map	pfam-sh	all-same	molybdopterin synthase subunit MoaE	2.-,2.8.1.12		3	1, 2, 3
gs-sh	orth	map	all-same	Integral membrane protein, interacts with FtsH			3	1, 2, 3
0	base_one HP	base_one HP	man-rest	MANUAL-REST			2	
gs-sh	0	0	majority	Predicted integral membrane protein			3	1, 2
0	orth	0	majority	Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes	2.7.8.-		3	1, 3
0	lit-s	0	majority	Metal-dependent hydrolase			3	1, 3
gs-sh	0	0	majority	ABC-type multidrug transport system, permease component			3	1, 2
lit-s	orth	tf_idf	all-same	Putative inner membrane protein YbhQ.			3	1, 2, 3
gs-sh	0	0	majority	ABC-type multidrug transport system, permease component			3	1, 2
gs-sh	0	0	majority	ABC-type multidrug transport system, ATPase component			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	gs-sh	pfam-sh	all-same	transcriptional regulator, TetR family			3	1, 2, 3
base_ec	lit-s	map	all-same	Superfamily II DNA and RNA helicases	3.6.4.13		3	1, 2, 3
gs-sh	0	0	majority	conserved hypothetical protein, ribA/ribD-fused			3	1, 2
0	0	gs-sh	majority	Rad3-related DNA helicases	3.6.4.12		3	2, 3
0	0	lit-s	majority	Anthranilate phosphoribosyltransferase			3	2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	0	0	all-same	Putative exported protein			2	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	gs-sh	majority	Uncharacterized iron-regulated protein	1.14.11.-		3	2, 3
gs-sh	0	0	majority	TonB-dependent siderophore receptor			3	1, 2
gs-sh	base_one HP	base_one HP	all-same	hypothetical protein			1	1, 2
0	0	0	man-rest	MANUAL-REST			3	
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	0	0	majority	L-glutamine ABC transporter membrane protein			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	DNA-binding ferritin-like protein (oxidative damage protectant)			3	1, 2
gs-sh	0	0	majority	Predicted permease, DMT superfamily			3	1, 2
gs-sh	orth	map	all-same	Opacity protein and related surface antigens			3	1, 2, 3
gs-sh	0	0	majority	Predicted membrane-associated, metal-dependent hydrolase			3	1, 2
gs-sh	0	0	majority	iron (metal) dependent repressor, DtxR family			3	1, 2
gs-sh	orth	map	all-same	transporter, YbiR family			3	1, 2, 3
0	lit-s	0	all-same	"L,D-transpeptidase YbiS"			2	1, 3
gs-sh	map	lit-s	all-same	ATPase components of ABC transporters with duplicated ATPase domains			3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG01046262: hypothetical protein			0	2, 3
base_ec	orth	pfam-sh	all-same	HAD-superfamily hydrolase, subfamily IIB	3.1.3.23		3	1, 2, 3
base_tigr	map	base_ec	all-same	pyruvate formate-lyase	2.3.1.54		3	1, 2, 3
base_tigr	map	base_ec	all-same	glycyl-radical enzyme activating protein family	1.97.1.4		3	1, 2, 3
base_tigr	0	0	majority	fructose 6-phosphate aldolase (EC 4.1.2.-)	4.1.2.-		3	1, 2
base_tigr	0	0	majority	[molybdopterin synthase] sulfurylase			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	molybdopterin molybdochelatase	2.10.1.1		3	1, 2, 3
base_ec-d	base_ec	base_ec-d	majority	asparaginase	3.4.19.5,3.5.1.1		3	1, 3
gs-sh	0	0	majority	ATPase components of various ABC-type transport systems, contain duplicated ATPase			3	1, 2
gs-sh	0	0	majority	ABC-type dipeptide transport system, periplasmic component			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			2	
base_tigr	map	pfam-sh	all-same	diguanylate cyclase (GGDEF) domain			3	1, 2, 3
gs-sh	0	0	majority	SSU ribosomal protein S12P methylthiotransferase	2.-,2.-.-.-		3	1, 2
0	0	gs-sh	majority	Biofilm formation protein (YliH/bssR).			3	2, 3
lit-s	0	0	majority	Glutathione S-transferase			3	1, 2
gs-sh	0	0	majority	Glucose/sorbosone dehydrogenases			3	1, 2
base_ec	base_ec	base_ec	all-same	penicillin-binding protein 6. Serine peptidase. MEROPS family S11	3.4.16.4		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	transcriptional regulator, DeoR family			3	1, 2, 3
gs-sh	gs-sh	map	all-same	Undecaprenyl-diphosphatase (EC 3.6.1.27)	3.6.1.27		3	1, 2, 3
gs-sh	gs-sh	map	all-same	Arabinose efflux permease			3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	FIG00639076: hypothetical protein			0	1, 2
gs-sh	gs-sh	gs-sh	all-same	HAD-superfamily hydrolase, subfamily IIB			3	1, 2, 3
gs-sh	orth	map	all-same	Major Facilitator Superfamily.			3	1, 2, 3
gs-sh	gs-sh	lit-s	all-same	transcriptional regulator, TetR family			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	Predicted permease			3	1, 2, 3
gs-sh	tf_idf	map	all-same	Putative inner membrane protein of Enterobacteriaceae.			3	1, 2, 3
base_tigr	gs-sh	map	all-same	Glutaredoxin, GrxA family			3	1, 2, 3
base_one HP	base_one HP	0	majority	hypothetical protein; Some similarities with putative membrane protein YbjC of Escherichia coli			1	
gs-sh	lit-s	orth	all-same	Nitroreductase	1.-		3	1, 2, 3
base_tigr	0	0	majority	SSU ribosomal protein S6P modification protein			3	1, 2
lit-s	lit-s	lit-s	all-same	Putative bacterial sensory transduction regulator.			3	1, 2, 3
gs-sh	0	0	majority	Spermidine/putrescine-binding periplasmic protein			3	1, 2
base_tigr	0	0	majority	spermidine/putrescine ABC transporter ATP-binding subunit			3	1, 2
gs-sh	lit-s	map	all-same	ABC-type spermidine/putrescine transport system, permease component I			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	orth	0	all-same	Putative inner membrane protein			2	1, 2, 3
base_ec	lit-s	gs-sh	all-same	23S rRNA m(5)U-747 methyltransferase (EC 2.1.1.189)	2.1.1.189		3	1, 2, 3
gs-sh	0	0	majority	L-arginine-binding protein			3	1, 2
base_both miss	base_one HP	base_one HP	all-hp	hypothetical protein	HP		0	
base_tigr	map	gs-sh	all-same	L-arginine ABC transporter membrane protein			3	1, 2, 3
base_tigr	0	0	majority	L-arginine ABC transporter membrane protein			3	1, 2
base_tigr	map	gs-sh	all-same	L-arginine-binding protein			3	1, 2, 3
gs-sh	tf_idf	map	all-same	L-arginine ABC transporter ATP-binding protein	3.6.3.-		3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	probable lipoprotein			1	1, 2
base_one HP	lit-s	base_one HP	all-same	hypothetical protein			0	1, 3
0	0	0	man-rest	MANUAL-REST			3	
base_ec	base_ec	base_ec	all-same	Negative regulator of beta-lactamase expression	3.5.1.28		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			2	
base_ec	base_ec	base_ec	all-same	L-threonine aldolase (EC 4.1.2.5)	4.1.2.5		3	1, 2, 3
base_ec	base_ec-d	base_ec-d	majority	pyruvate dehydrogenase (quinone) (EC 1.2.5.1)	1.2.5.1		3	1, 2
gs-sh	base_lit-s	gs-sh	all-same	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	1.-		3	1, 2, 3
base_tigr	lit-s	tf_idf	all-same	hydroxylamine reductase precursor	1.7.-,1.7.99.1		3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	lit-s	map	all-same	MIP family channel proteins			3	1, 2, 3
base_one HP	base_one HP	0	majority	Virulence factor VirK			1	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	lit-s	orth	all-same	RND family efflux transporter, MFP subunit			3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	ABC-type antimicrobial peptide transport system, ATPase component	3.6.3.-		3	1, 2, 3
base_tigr	lit-s	map	all-same	cold-shock DNA-binding protein family			3	1, 2, 3
0	lit-s	0	all-same	ATP-dependent Clp protease adaptor protein ClpS			2	1, 3
base_lit-s	base_lit-s	base_lit-s	all-same	ATP-dependent Clp protease ATP-binding subunit ClpA	3.4.21.92		3	1, 2, 3
base_tigr	gs-sh	map	all-same	bacterial translation initiation factor 1 (bIF-1)			3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	leucyl/phenylalanyl-tRNA--protein transferase	2.3.2.6		3	1, 2, 3
base_lit-s	0	0	majority	thiol reductant ABC exporter, CydC subunit			3	1, 2
base_lit-s	0	0	majority	thiol reductant ABC exporter, CydD subunit			3	1, 2
base_lit-s	base_ec	base_ec	all-same	thioredoxin-disulfide reductase	1.8.1.9		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	transcriptional regulator, AsnC family			3	1, 2, 3
lit-s	gs-sh	gs-sh	all-same	DNA translocase FtsK			3	1, 2, 3
base_tigr	pfam-sh	pfam-sh	all-same	periplasmic chaperone LolA			3	1, 2, 3
gs-sh	0	0	majority	Recombination protein MgsA			3	1, 2
base_tigr	base_ec	base_ec	all-same	seryl-tRNA synthetase (EC 6.1.1.11)	6.1.1.11		3	1, 2, 3
gs-sh	lit-s	tf_idf	all-same	anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	1.8.5.3		3	1, 2, 3
base_tigr	gs-sh	map	all-same	DMSO reductase, iron-sulfur subunit			3	1, 2, 3
lit-s	map	orth	all-same	DMSO reductase anchor subunit			3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	orth	map	all-same	amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	transcriptional regulator, LysR family			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_lit-s	base_ec	base_ec	all-same	pyruvate formate-lyase 1-activating enzyme	1.97.1.4		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	formate acetyltransferase 1	2.3.1.54		3	1, 2, 3
base_lit-s	tf_idf	tf_idf	all-same	formate transporter FocA			3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00613574: hypothetical protein			0	2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_tigr	base_ec	base_ec	all-same	phosphoserine aminotransferase apoenzyme (EC 2.6.1.52)	2.6.1.52		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)	2.5.1.19		3	1, 2, 3
0	0	gs-sh	majority	Zn-dependent protease with chaperone function	3.4.24.-		3	2, 3
base_tigr	base_ec	base_ec	all-same	cytidylate kinase (EC 2.7.4.14)	2.7.4.14		3	1, 2, 3
base_tigr	orth	lit-s	all-same	SSU ribosomal protein S1P			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	integration host factor, beta subunit			3	1, 2, 3
base_lit-s	base_lit-s	base_lit-s	all-same	DNA internalization-related competence protein ComEC/Rec2			3	1, 2, 3
base_lit-s	gs-sh	tf_idf	all-same	lipid A export permease/ATP-binding protein MsbA	3.6.3.-		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	lipid-A-disaccharide kinase (EC 2.7.1.130)	2.7.1.130		3	1, 2, 3
base_one HP	base_one HP	0	majority	FIG004798: Putative cytoplasmic protein			1	
0	0	0	man-rest	MANUAL-REST			2	
base_lit-s	base_ec	base_ec	all-same	3-deoxy-D-manno-octulosonate cytidylyltransferase	2.7.7.38		3	1, 2, 3
base_one HP	base_one HP	0	majority	Membrane Protein Functionally coupled to the MukBEF Chromosome Partitioning Mechanism			1	
lit-s	base_one HP	base_one HP	all-same	FIG00637875: hypothetical protein			0	1, 2
gs-sh	0	0	majority	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase			3	1, 2
gs-sh	lit-s	map	all-same	bacterial condensin subunit MukF			3	1, 2, 3
gs-sh	lit-s	pfam-sh	all-same	bacterial condensin subunit MukE			3	1, 2, 3
gs-sh	lit-s	pfam-sh	all-same	bacterial condensin subunit MukB			3	1, 2, 3
0	lit-s	0	all-same	"L,D-transpeptidase YcbB"			2	1, 3
base_one HP	base_one HP	0	majority	FIG001587: exported protein			1	
0	0	0	man-rest	MANUAL-REST			3	
base_ec	base_ec	base_ec	all-same	Aspartate/tyrosine/aromatic aminotransferase	2.6.1.1		3	1, 2, 3
gs-sh	tf_idf	tf_idf	all-same	Outer membrane protein (porin)			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	asparaginyl-tRNA synthetase (EC 6.1.1.22)	6.1.1.22		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	nicotinate phosphoribosyltransferase	2.4.2.11		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	aminopeptidase N, Escherichia coli type	3.4.11.2		3	1, 2, 3
gs-sh	0	0	majority	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component	3.6.3.-		3	1, 2
gs-sh	gs-sh	map	all-same	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	alkanesulfonate monooxygenase (EC 1.14.14.5)	1.14.14.5		3	1, 2, 3
0	orth	0	majority	ABC transporter, substrate-binding protein, aliphatic sulfonates family			3	1, 3
base_tigr	base_lit-s	tf_idf	all-same	FMN reductase, SsuE family			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	P pilus assembly protein, chaperone PapD			3	1, 2
0	0	gs-sh	majority	P pilus assembly protein, porin PapC			3	2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	gs-sh	majority	P pilus assembly protein, chaperone PapD			3	2, 3
base_tigr	base_ec-d	base_ec-d	majority	dihydroorotate oxidase A	1.3.98.1,1.3.3.1		3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	lit-s	all-same	FIG01199806: hypothetical protein			0	2, 3
base_ec-d	gs-sh	gs-sh	all-same	23S rRNA m(2)G-2445 methyltransferase	2.1.1.173,2.1.1.52		3	1, 2, 3
gs-sh	map	lit-s	all-same	ATPase components of ABC transporters with duplicated ATPase domains			3	1, 2, 3
base_tigr	0	0	majority	integral membrane protein, PqiA family			3	1, 2
0	0	base_lit-s	majority	Paraquat-inducible protein B			3	2, 3
base_one HP	base_one HP	0	majority	Paraquat-inducible protein B			1	
base_one miss	base_both miss	base_one miss	majority	Ribosome modulation factor			1	
base_tigr	base_ec	base_ec	all-same	3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	4.2.1.60		3	1, 2, 3
0	0	tf_idf	majority	Predicted ATP-dependent protease	3.4.21.-		3	2, 3
0	0	lit-s	all-same	FIG01201035: hypothetical protein			1	2, 3
gs-sh	orth	map	all-same	Outer membrane protein and related peptidoglycan-associated (lipo)proteins			3	1, 2, 3
gs-sh	gs-sh	orth	all-same	SOS cell division inhibitor SulA			3	1, 2, 3
gs-sh	0	0	majority	hypothetical membrane protein, TIGR01666			3	1, 2
gs-sh	orth	map	all-same	regulator of competence-specific genes			3	1, 2, 3
gs-sh	lit-s	orth	all-same	Predicted membrane protein			3	1, 2, 3
base_ec	gs-sh	map	all-same	Superfamily I DNA and RNA helicases	3.6.4.12		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	methylglyoxal synthase	4.2.3.3		3	1, 2, 3
base_one HP	base_one HP	0	majority	UPF0319 protein YccT precursor			1	
base_one miss	lit-s	base_one miss	all-same	FIG00638691: hypothetical protein			0	1, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_tigr	0	0	majority	hemimethylated DNA binding domain			3	1, 2
base_ec	0	0	majority	23S rRNA m(5)C-1962 methyltransferase (EC 2.1.1.191)	2.1.1.191		3	1, 2
base_tigr	gs-sh	gs-sh	all-same	sulfur relay protein, TusE/DsrC/DsvC family	2.8.1.-		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Acylphosphatases	3.6.1.7		3	1, 2, 3
gs-sh	0	0	majority	Integral membrane protein, interacts with FtsH			3	1, 2
base_ec	base_ec	base_ec	all-same	[NiFe]-hydrogenase I apoprotein, small subunit	1.12.99.6		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	[NiFe]-hydrogenase I apoprotein, large subunit	1.12.99.6		3	1, 2, 3
base_tigr	0	0	majority	[NiFe]-hydrogenase I apocytochrome b subunit			3	1, 2
gs-sh	gs-sh	map	all-same	Hydrogenase 1 maturation peptidase HyaD. Aspartic peptidase. MEROPS family A31	3.4.24.-		3	1, 2, 3
gs-sh	map	pfam-sh	all-same	Tat proofreading chaperone HyaE			3	1, 2, 3
lit-s	0	0	majority	HupH hydrogenase expression protein, C-terminal conserved region.			3	1, 2
gs-sh	0	0	majority	cytochrome bd-II ubiquinol oxidase subunit 1 apoprotein	1.10.3.-,1.10.3.11		3	1, 2
base_tigr	lit-s	map	all-same	cytochrome bd-II ubiquinol oxidase subunit 2 apoprotein	1.10.3.-,1.10.3.11		3	1, 2, 3
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	capsular exopolysaccharide family			3	1, 2
base_ec	base_ec	base_ec	all-same	Protein-tyrosine-phosphatase	3.1.3.48		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	0	majority	Uncharacterized lipoprotein YmcC precursor			1	
base_lit-s	base_lit-s	base_lit-s	all-same	hypothetical protein			0	1, 2, 3
base_one miss	base_both miss	base_one miss	majority	Transposase and inactivated derivatives			1	
0	0	0	man-rest	MANUAL-REST			3	
base_one miss	0	base_one miss	man-rest	MANUAL-REST			2	
gs-sh	0	0	majority	cold-shock DNA-binding protein family			3	1, 2
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
lit-s	gs-sh	map	all-same	GnsA/GnsB family.			3	1, 2, 3
gs-sh	0	0	majority	Polyferredoxin			3	1, 2
base_tigr	gs-sh	gs-sh	all-same	histidine kinase TorS	2.7.13.3		3	1, 2, 3
gs-sh	lit-s	map	all-same	response regulator TorR			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	TMAO-binding protein			3	1, 2, 3
base_lit-s	gs-sh	gs-sh	all-same	trimethylamine-N-oxide reductase c-type cytochrome TorC			3	1, 2, 3
base_lit-s	base_ec-d	base_ec-d	majority	trimethylamine-N-oxide reductase TorA	1.7.2.3		3	1, 2
gs-sh	lit-s	map	all-same	Tat proofreading chaperone TorD			3	1, 2, 3
gs-sh	orth	map	all-same	MerR HTH family regulatory protein.			3	1, 2, 3
gs-sh	gs-sh	pfam-sh	all-same	DnaJ-class molecular chaperone with C-terminal Zn finger domain			3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	FIG00638642: hypothetical protein			0	1, 2
base_ec	base_ec	base_ec	all-same	Histidine phosphatase superfamily (branch 2).	3.1.3.10		3	1, 2, 3
lit-s	0	0	all-same	YccJ-like protein.			2	1, 2
base_tigr	gs-sh	gs-sh	all-same	NAD(P)H:quinone oxidoreductase, type IV			3	1, 2, 3
base_one miss	base_both miss	base_one miss	majority	Stress-induced bacterial acidophilic repeat motif.			1	
base_both miss	base_one HP	base_one HP	all-hp	hypothetical protein	HP		0	
base_lit-s	0	0	majority	pyrimidine utilization transport protein G			3	1, 2
base_lit-s	0	0	majority	pyrimidine utilization flavin reductase protein F	1.5.1.-		3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
base_lit-s	0	0	majority	pyrimidine utilization protein D	3.5.1.-		3	1, 2
base_lit-s	0	0	majority	pyrimidine utilization protein C			3	1, 2
base_lit-s	0	0	majority	pyrimidine utilization protein B			3	1, 2
base_lit-s	0	0	majority	pyrimidine utilization protein A			3	1, 2
base_tigr	gs-sh	pfam-sh	all-same	transcriptional regulator, TetR family			3	1, 2, 3
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
base_one miss	lit-s	base_one miss	all-same	FIG00639374: hypothetical protein			0	1, 3
base_lit-s	gs-sh	gs-sh	all-same	sodium/proline symporter			3	1, 2, 3
gs-sh	0	0	majority	High-affinity Fe2+/Pb2+ permease			3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	0	0	majority	Tat-translocated enzyme	1.11.1.19		3	1, 2
gs-sh	gs-sh	lit-s	all-same	Phosphate starvation-inducible protein PhoH, predicted ATPase			3	1, 2, 3
base_lit-s	pfam-sh	pfam-sh	all-same	poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD			3	1, 2, 3
base_lit-s	gs-sh	map	all-same	poly-beta-1,6 N-acetyl-D-glucosamine synthase	2.4.-		3	1, 2, 3
base_lit-s	0	0	majority	poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	3.-		3	1, 2
base_tigr	0	0	majority	poly acetylglucosamine porin (TC 1.B.55)			3	1, 2
tf_idf	map	pfam-sh	all-same	diguanylate cyclase (GGDEF) domain			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
lit-s	0	0	majority	Transposase.			3	1, 2
base_one HP	base_one HP	base_lit-s	all-same	hypothetical protein			1	2, 3
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	lit-s	map	all-same	Histidinol phosphatase and related hydrolases of the PHP family			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	lit-s	0	all-same	Inner membrane protein YcdZ			2	1, 2, 3
0	lit-s	0	majority	Uncharacterized protein involved in formation of curli polymers			3	1, 3
lit-s	pfam-sh	pfam-sh	all-same	Type VIII secretion system (T8SS), CsgF protein.			3	1, 2, 3
lit-s	pfam-sh	map	all-same	Curli assembly protein CsgE.			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain			3	1, 2, 3
base_one miss	lit-s	base_one miss	all-same	FIG00637955: hypothetical protein			0	1, 3
gs-sh	tf_idf	map	all-same	Curlin associated repeat.			3	1, 2, 3
gs-sh	tf_idf	map	all-same	Curlin associated repeat.			3	1, 2, 3
gs-sh	orth	map	all-same	Thin aggregative fimbriae synthesis protein.			3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	FIG00638598: hypothetical protein			0	1, 2
gs-sh	0	0	majority	Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1			3	1, 2
0	orth	0	majority	Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes			3	1, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	orth	orth	all-same	Periplasmic glucans biosynthesis protein			3	1, 2, 3
gs-sh	lit-s	orth	all-same	Membrane glycosyltransferase	2.4.1.-		3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
lit-s	gs-sh	gs-sh	all-same	MsyB protein.			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	lit-s	tf_idf	all-same	lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase	2.3.1.-		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	gs-sh	gs-sh	all-same	Protein yceI precursor			2	1, 2, 3
base_one HP	base_one HP	base_lit-s	all-same	Cytochrome B561			2	2, 3
gs-sh	0	0	majority	Glycine/D-amino acid oxidases (deaminating)	1.5.3.-		3	1, 2
lit-s	0	0	majority	BssS protein family.			3	1, 2
gs-sh	base_lit-s	map	all-same	DinI-like family.			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	dihydroorotase (EC 3.5.2.3)	3.5.2.3		3	1, 2, 3
base_one HP	base_one HP	gs-sh	all-same	Putative lipoprotein yceB precursor			1	2, 3
base_tigr	gs-sh	orth	all-same	Glutaredoxin, GrxB family			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_ec	0	0	majority	[SSU ribosomal protein S5P]-alanine acetyltransferase (EC 2.3.1.128)	2.3.1.128		3	1, 2
base_one HP	base_one HP	0	majority	Protein of unknown function YceH			1	
base_one HP	base_one HP	gs-sh	all-same	Predicted dehydrogenases and related proteins			2	2, 3
base_lit-s	0	0	majority	integral membrane protein MviN			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	Flagellar biosynthesis/type III secretory pathway chaperone			3	1, 2, 3
base_tigr	pfam-sh	pfam-sh	all-same	anti-sigma-28 factor, FlgM family			3	1, 2, 3
base_lit-s	0	0	majority	flagella basal body P-ring formation protein FlgA			3	1, 2
base_lit-s	lit-s	lit-s	all-same	flagellar basal-body rod protein FlgB			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	flagellar basal-body rod protein FlgC			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Flagellar hook capping protein			3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	fagellar hook-basal body proteins			3	1, 2, 3
gs-sh	lit-s	map	all-same	fagellar hook-basal body proteins			3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	flagellar basal-body rod protein FlgG, Gram-negative bacteria			3	1, 2, 3
tf_idf	tf_idf	tf_idf	all-same	Flagellar basal body L-ring protein			3	1, 2, 3
tf_idf	tf_idf	tf_idf	all-same	Flagellar basal-body P-ring protein			3	1, 2, 3
base_lit-s	gs-sh	gs-sh	all-same	flagellar rod assembly protein/muramidase FlgJ			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	flagellar hook-associated protein FlgK			3	1, 2, 3
base_lit-s	gs-sh	gs-sh	all-same	flagellar hook-associated protein 3			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	RNAse E (EC 3.1.26.12)	3.1.26.12		3	1, 2, 3
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_tigr	tf_idf	base_ec-d	all-same	ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24)	5.4.99.24		3	1, 2, 3
base_tigr	0	0	majority	MAF protein			3	1, 2
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_tigr	map	lit-s	all-same	LSU ribosomal protein L32P			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	phosphate:acyl-[acyl carrier protein] acyltransferase	2.3.1.15		3	1, 2, 3
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
base_tigr	base_ec	base_ec	all-same	[Acyl-carrier-protein] S-malonyltransferase (EC 2.3.1.39)	2.3.1.39		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100)	1.1.1.100		3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	acyl carrier protein			3	1, 2, 3
base_tigr	base_ec-d	base_ec-d	majority	3-oxoacyl-[acyl-carrier-protein] synthase II	2.3.1.179,2.3.1.41		3	1, 2
base_tigr	base_ec	base_ec	all-same	aminodeoxychorismate lyase apoprotein  (EC 4.1.3.38)	4.1.3.38		3	1, 2, 3
gs-sh	gs-sh	pfam-sh	all-same	conserved hypothetical protein, YceG family			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	thymidylate kinase (EC 2.7.4.9)	2.7.4.9		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	DNA polymerase III, delta prime subunit (EC 2.7.7.7)	2.7.7.7		3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	base_ec-d	0	majority	PTS system D-glucose-specific IIB component, Glc family (TC 4.A.1.1.1)/PTS system D-glucose-specific IIC component, Glc family (TC 4.A.1.1.1)			3	1, 2
gs-sh	0	0	majority	TonB-dependent siderophore receptor			3	1, 2
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
pfam-sh	map	gs-sh	all-same	Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases			3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_lit-s	base_ec-d	base_ec-d	majority	thiamine kinase	2.7.1.89		3	1, 2
0	0	base_ec	majority	beta-N-acetylhexosaminidase (EC:3.2.1.52)	3.2.1.52		3	2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_ec	base_lit-s	base_ec	all-same	NADH dehydrogenase, FAD-containing subunit	1.6.99.3		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	gs-sh	lit-s	all-same	transcriptional regulator, TetR family			3	1, 2, 3
gs-sh	orth	0	all-same	Putative outer membrane protein			2	1, 2, 3
0	lit-s	0	all-same	"L,D-transpeptidase YcfS"			2	1, 3
base_tigr	lit-s	gs-sh	all-same	transcription-repair coupling factor (mfd)	3.6.4.-		3	1, 2, 3
gs-sh	0	0	all-same	Predicted membrane protein			2	1, 2
gs-sh	0	0	majority	lipoprotein releasing system, transmembrane protein, LolC/E family			3	1, 2
base_tigr	gs-sh	gs-sh	all-same	lipoprotein releasing system, ATP-binding protein	3.6.3.-		3	1, 2, 3
gs-sh	gs-sh	lit-s	all-same	lipoprotein releasing system, transmembrane protein LolE			3	1, 2, 3
0	0	gs-sh	majority	N-acetylglucosamine kinase (EC 2.7.1.59)	2.7.1.59		3	2, 3
0	0	pfam-sh	majority	NAD-dependent protein deacetylases, SIR2 family	3.5.1.-		3	2, 3
gs-sh	0	0	majority	Beta-propeller domains of methanol dehydrogenase type			3	1, 2
gs-sh	0	lit-s	all-same	FIG00639097: hypothetical protein			1	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	gs-sh	majority	ABC-type spermidine/putrescine transport system, permease component II			3	2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	0	0	majority	spermidine/putrescine ABC transporter ATP-binding subunit	3.6.3.31		3	1, 2
base_one miss	lit-s	base_one miss	all-same	FIG00639905: hypothetical protein			0	1, 3
base_tigr	gs-sh	base_ec	all-same	peptidase T. Metallo peptidase. MEROPS family M20B	3.4.11.4		3	1, 2, 3
0	0	lit-s	all-same	FIG002776: hypothetical protein			1	2, 3
base_ec	base_ec	base_ec	all-same	Signal transduction histidine kinase	2.7.13.3		3	1, 2, 3
gs-sh	lit-s	map	all-same	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	Adenylosuccinate lyase (EC 4.3.2.2)	4.3.2.2		3	1, 2, 3
gs-sh	0	0	majority	Uncharacterized protein involved in purine metabolism			3	1, 2
base_lit-s	gs-sh	gs-sh	all-same	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	2.8.1.-,2.1.1.61		3	1, 2, 3
gs-sh	0	0	majority	ADP-ribose pyrophosphatase	3.6.1.-		3	1, 2
base_tigr	tf_idf	lit-s	all-same	ribosomal large subunit pseudouridine synthase E	5.4.99.20,5.4.99.-		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	isocitrate dehydrogenase (NADP) (EC 1.1.1.42)	1.1.1.42		3	1, 2, 3
base_one miss	base_both miss	base_one miss	majority	Methyltransferase domain.			1	
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
lit-s	0	0	majority	Peptidase U49.			3	1, 2
0	orth	0	majority	Bacteriophage lambda integrase, N-terminal domain./Phage integrase family.			3	1, 3
base_one miss	base_both miss	base_one miss	majority	Excisionase-like protein.			1	
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
base_one HP	base_one HP	base_lit-s	all-same	hypothetical protein			0	2, 3
0	0	0	man-rest	MANUAL-REST			3	
lit-s	lit-s	base_lit-s	all-same	hypothetical protein			0	1, 2, 3
base_one HP	0	base_one HP	majority	FIG00639586: hypothetical protein			1	
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
base_both miss	base_one miss	base_one miss	all-hp	hypothetical protein	HP		0	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	0	base_one HP	majority	FIG00640168: hypothetical protein			1	
0	lit-s	0	majority	Phage-related protein			3	1, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	majority	FIG121501: Prophage tail protein			1	
lit-s	base_one HP	base_one HP	all-same	Prophage tail fiber protein			1	1, 2
lit-s	0	0	majority	Caudovirales tail fibre assembly protein.			3	1, 2
lit-s	0	0	majority	Caudovirales tail fibre assembly protein.			3	1, 2
lit-s	0	0	majority	Phage Tail Collar Domain.			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
0	pfam-sh	0	majority	Predicted restriction endonuclease	3.1.21.-		3	1, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	majority	Phage envelope protein			1	
gs-sh	gs-sh	gs-sh	all-same	Predicted transcriptional regulators			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	FOG: EAL domain			3	1, 2, 3
base_one miss	base_both miss	base_one miss	majority	Biofilm development protein YmgB/AriR.			1	
0	base_one miss	base_one miss	man-rest	MANUAL-REST			2	
base_one HP	0	base_one HP	majority	FIG00638803: hypothetical protein			1	
lit-s	0	0	all-same	FOG: EAL domain			2	1, 2
base_one HP	0	base_one HP	majority	FIG00638313: hypothetical protein			1	
base_tigr	orth	map	all-same	outer membrane autotransporter barrel domain			3	1, 2, 3
base_tigr	orth	map	all-same	outer membrane autotransporter barrel domain			3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	FIG00637894: hypothetical protein			0	1, 2
lit-s	0	0	all-same	Glycine zipper.			2	1, 2
base_one miss	0	base_one miss	man-rest	MANUAL-REST			2	
base_lit-s	lit-s	lit-s	all-same	cell division topological specificity factor MinE			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	septum site-determining protein MinD			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	septum site-determining protein MinC			3	1, 2, 3
lit-s	0	0	majority	Fels-1 Prophage Protein-like.			3	1, 2
base_one HP	base_one HP	0	majority	Bacterial pre-peptidase C-terminal domain.			1	
base_one HP	base_one HP	0	majority	Protein YcgL			1	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			2	
gs-sh	lit-s	map	all-same	Haemolysin E (HlyE).			3	1, 2, 3
gs-sh	0	0	majority	SOS response UmuD protein. Serine peptidase. MEROPS family S24	3.4.21.-		3	1, 2
gs-sh	0	0	majority	Nucleotidyltransferase/DNA polymerase involved in DNA repair			3	1, 2
pfam-sh	pfam-sh	pfam-sh	all-same	Thiol:disulfide interchange protein DsbB			3	1, 2, 3
base_tigr	lit-s	pfam-sh	all-same	sodium/proton antiporter, NhaB family (TC 2.A.34.1.1)			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	transcriptional regulator, GntR family			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			2	
0	0	base_ec	majority	D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	1.4.99.1		3	2, 3
base_tigr	tf_idf	tf_idf	all-same	alanine racemase (EC 5.1.1.1)	5.1.1.1		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_ec	base_ec	base_ec	all-same	murein tetrapeptidase LD-carboxypeptidase (EC:3.4.17.13). Serine peptidase. MEROPS family S66	3.4.17.13		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	Predicted glycosyltransferase			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
lit-s	base_one HP	base_one HP	all-same	FIG00637958: hypothetical protein			0	1, 2
base_ec	0	0	majority	Neutral trehalase	3.2.1.28		3	1, 2
gs-sh	0	0	majority	Phosphotransferase System HPr (HPr) Family			3	1, 2
base_tigr	0	0	majority	dihydroxyacetone kinase DhaL subunit	2.7.1.-,2.7.1.121		3	1, 2
base_tigr	0	0	majority	dihydroxyacetone kinase DhaK subunit	2.7.1.-,2.7.1.121		3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	orth	orth	all-same	outer membrane autotransporter barrel domain			3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	FIG00638199: hypothetical protein			0	1, 2
gs-sh	gs-sh	gs-sh	all-same	GTP-binding protein YchF			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	peptidyl-tRNA hydrolase (EC 3.1.1.29)	3.1.1.29		3	1, 2, 3
base_one HP	base_one HP	0	majority	Putative membrane protein YchH			1	
gs-sh	gs-sh	map	all-same	high affinity sulphate transporter 1			3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	ribose-phosphate pyrophosphokinase	2.7.6.1		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)	2.7.1.148		3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	outer membrane lipoprotein LolB			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	glutamyl-tRNA reductase (EC 1.2.1.70)	1.2.1.70		3	1, 2, 3
base_tigr	lit-s	tf_idf	all-same	bacterial peptide chain release factor 1 (bRF-1)			3	1, 2, 3
gs-sh	0	0	majority	[protein release factor]-glutamine N5-methyltransferase (EC 2.1.1.-)	2.1.1.-		3	1, 2
gs-sh	lit-s	0	all-same	FIG002082: Protein SirB2			2	1, 2, 3
0	0	0	man-rest	MANUAL-REST			2	
base_lit-s	base_ec	base_ec	all-same	3-deoxy-8-phosphooctulonate synthase	2.5.1.55		3	1, 2, 3
gs-sh	lit-s	orth	all-same	calcium/proton exchanger			3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	Putative cation transport regulator			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Uncharacterized protein involved in cation transport			3	1, 2, 3
gs-sh	orth	map	all-same	Uncharacterized conserved protein involved in intracellular sulfur reduction			3	1, 2, 3
base_one HP	base_one HP	0	majority	Invasin			1	
gs-sh	tf_idf	map	all-same	two component transcriptional regulator, LuxR family			3	1, 2, 3
base_ec	orth	map	all-same	Signal transduction histidine kinase, nitrate/nitrite-specific	2.7.13.3		3	1, 2, 3
base_one HP	lit-s	base_one HP	all-same	FIG00637970: hypothetical protein			0	1, 3
gs-sh	gs-sh	map	all-same	nitrite extrusion protein (nitrite facilitator)			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	respiratory nitrate reductase alpha subunit apoprotein	1.7.99.4		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	respiratory nitrate reductase beta subunit	1.7.99.4		3	1, 2, 3
base_tigr	gs-sh	map	all-same	respiratory nitrate reductase chaperone NarJ			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	respiratory nitrate reductase gamma subunit	1.7.99.4		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	formyltetrahydrofolate deformylase (EC 3.5.1.10)	3.5.1.10		3	1, 2, 3
base_one HP	base_one HP	0	majority	UPF0225 protein YchJ			1	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	lit-s	map	all-same	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	UDP-glucose pyrophosphorylase (EC 2.7.7.9)	2.7.7.9		3	1, 2, 3
gs-sh	base_lit-s	map	all-same	nucleoid protein H-NS			3	1, 2, 3
lit-s	lit-s	base_ec	all-same	thymidine kinase (EC 2.7.1.21)	2.7.1.21		3	1, 2, 3
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
lit-s	0	0	majority	Insertion element 4 transposase N-terminal.			3	1, 2
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
gs-sh	orth	orth	all-same	membrane protein, MarC family			3	1, 2, 3
base_one HP	lit-s	base_one HP	all-same	FIG00638240: hypothetical protein			0	1, 3
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
gs-sh	gs-sh	gs-sh	all-same	ABC-type oligopeptide transport system, periplasmic component			3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components			3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components			3	1, 2, 3
base_tigr	0	0	majority	oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain			3	1, 2
base_tigr	map	gs-sh	all-same	oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain			3	1, 2, 3
base_one HP	base_one HP	0	majority	FIG002901: hypothetical protein co-occurring with Cardiolipin synthetase			1	
gs-sh	lit-s	tf_idf	all-same	cardiolipin synthetase 2 (EC 2.7.8.-)	2.7.8.-		3	1, 2, 3
gs-sh	0	0	majority	K+ transport systems, NAD-binding component			3	1, 2
gs-sh	0	0	all-same	YciL protein			2	1, 2
lit-s	gs-sh	pfam-sh	all-same	TonB family C-terminal domain			3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_lit-s	gs-sh	gs-sh	all-same	intracellular septation protein A			3	1, 2, 3
base_one HP	base_one HP	gs-sh	all-same	"Membrane protein YciC, linked to IspA"			1	2, 3
lit-s	tf_idf	tf_idf	all-same	Outer membrane protein W			3	1, 2, 3
gs-sh	lit-s	0	all-same	Protein YciE			2	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	Protein yciF			2	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_tigr	base_ec	base_ec	all-same	tryptophan synthase, alpha chain (EC 4.2.1.20)	4.2.1.20		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	tryptophan synthase, beta chain (EC 4.2.1.20)	4.2.1.20		3	1, 2, 3
base_ec-d	base_ec-d	base_ec	majority	Indole-3-glycerol phosphate synthase	4.1.1.48, 5.3.1.24		3	2, 3
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
base_tigr	base_ec	base_ec	all-same	anthranilate synthase, component I (EC 4.1.3.27)	4.1.3.27		3	1, 2, 3
pfam-sh	pfam-sh	pfam-sh	all-same	Predicted metal-dependent phosphoesterases (PHP family)			3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	0	majority	Predicted membrane protein (DUF2207).			1	
base_tigr	tf_idf	lit-s	all-same	ribosomal large subunit pseudouridine synthase B	5.4.99.22,5.4.99.-		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	cob(I)yrinic acid a,c-diamide adenosyltransferase (EC 2.5.1.17)	2.5.1.17		3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	lit-s	gs-sh	all-same	inner membrane peptidase. Serine peptidase. MEROPS family S49	3.4.21.-		3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	Protein yciN			2	1, 2, 3
base_tigr	base_lit-s	base_ec	all-same	DNA topoisomerase I (EC 5.99.1.2)	5.99.1.2		3	1, 2, 3
gs-sh	map	tf_idf	all-same	Transcriptional regulator			3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	FIG00638229: hypothetical protein			0	1, 2
base_tigr	base_ec-d	base_ec-d	majority	aconitase (EC 4.2.1.3)	4.2.1.3		3	1, 2
base_ec	base_ec	base_ec	all-same	GTP cyclohydrolase II (EC 3.5.4.25)	3.5.4.25		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	phosphatidylglycerophosphatase (EC 3.1.3.27)	3.1.3.27		3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	Predicted membrane protein			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_ec	base_ec	base_ec	all-same	orotidine-5'-phosphate decarboxylase (EC 4.1.1.23)	4.1.1.23		3	1, 2, 3
base_one HP	base_one HP	pfam-sh	all-same	translation initiation factor 1 (eIF-1/SUI1)			2	2, 3
lit-s	0	0	majority	Glycine zipper 2TM domain.			3	1, 2
gs-sh	0	0	majority	transcriptional regulator, DeoR family			3	1, 2
base_one HP	0	base_one HP	majority	FIG00638067: hypothetical protein			1	
base_ec	base_one HP	base_one HP	all-same	diguanylate cyclase/phosphodiesterase	3.1.4.52		2	1, 2
base_lit-s	base_ec	base_ec	all-same	exoribonuclease II	3.1.13.1		3	1, 2, 3
0	0	lit-s	all-same	FIG01220641: hypothetical protein			1	2, 3
base_ec	base_ec	base_ec	all-same	Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9)	1.3.1.9		3	1, 2, 3
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
gs-sh	lit-s	map	all-same	ABC-type antimicrobial peptide transport system, ATPase component			3	1, 2, 3
base_tigr	0	0	majority	oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain			3	1, 2
gs-sh	lit-s	orth	all-same	ABC-type antimicrobial peptide transport system, permease component			3	1, 2, 3
gs-sh	lit-s	orth	all-same	ABC-type antimicrobial peptide transport system, permease component			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	lit-s	all-same	FIG00639322: hypothetical protein			0	2, 3
gs-sh	gs-sh	map	all-same	putrescine:proton symporter, AAT family (TC 2.A.3.1.13)			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	glutamate--putrescine ligase	6.3.1.11		3	1, 2, 3
0	0	base_ec	majority	gamma-glutamyl-gamma-aminobutyrate hydrolase	3.5.1.94		3	2, 3
gs-sh	0	0	majority	transcriptional regulator, XRE family with cupin sensor			3	1, 2
gs-sh	0	0	majority	gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase	1.2.1.-		3	1, 2
gs-sh	0	0	majority	gamma-glutamylputrescine oxidase	1.4.3.-		3	1, 2
base_tigr	base_ec	base_ec	all-same	4-aminobutyrate aminotransferase apoenzyme (EC 2.6.1.19)	2.6.1.19		3	1, 2, 3
base_tigr	lit-s	orth	all-same	psp operon transcriptional activator PspF			3	1, 2, 3
base_tigr	lit-s	tf_idf	all-same	phage shock protein A (PspA) family protein			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	phage shock protein B			3	1, 2, 3
base_tigr	lit-s	tf_idf	all-same	phage shock protein C (PspC) family protein			3	1, 2, 3
lit-s	tf_idf	orth	all-same	phage shock protein PspD			3	1, 2, 3
base_ec	0	0	majority	thiosulfate sulfurtransferase	2.8.1.1		3	1, 2
0	0	base_ec	majority	sucrose phosphorylase (EC 2.4.1.7)	2.4.1.7		3	2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			3	
base_lit-s	base_ec	base_ec	all-same	beta-phosphoglucomutase	5.4.2.6		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	orth	tf_idf	all-same	Outer membrane protein G (OmpG).			3	1, 2, 3
0	0	pfam-sh	majority	transcriptional regulator, LacI family			3	2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	0	majority	Membrane protein YcjF			1	
gs-sh	gs-sh	gs-sh	all-same	Transcriptional regulator of aromatic amino acids metabolism			3	1, 2, 3
gs-sh	tf_idf	base_ec-d	all-same	thiol peroxidase (atypical 2-Cys peroxiredoxin)	1.11.1.15,1.11.1.5		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily			3	1, 2
lit-s	base_one HP	base_one HP	all-same	Oxidoreductase (putative)			1	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	gs-sh	gs-sh	all-same	transcriptional regulator, LysR family			3	1, 2, 3
gs-sh	tf_idf	map	all-same	ABC-type oligopeptide transport system, periplasmic component			3	1, 2, 3
map	lit-s	orth	all-same	Small-conductance mechanosensitive channel			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	majority	Putative inner membrane protein			1	
gs-sh	lit-s	orth	all-same	Universal stress protein UspA and related nucleotide-binding proteins			3	1, 2, 3
gs-sh	lit-s	map	all-same	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	O-6-methylguanine DNA methyltransferase	2.1.1.63		3	1, 2, 3
gs-sh	lit-s	map	all-same	p-Aminobenzoyl-glutamate transporter family			3	1, 2, 3
base_tigr	0	0	majority	p-Aminobenzoyl-glutamate hydrolase, B subunit			3	1, 2
gs-sh	0	0	majority	p-aminobenzoyl-glutamate hydrolase, A subunit			3	1, 2
gs-sh	0	0	majority	Transcriptional regulator			3	1, 2
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
0	0	lit-s	all-same	FIG00638524: hypothetical protein			1	2, 3
0	0	0	man-rest	MANUAL-REST			2	
gs-sh	lit-s	map	all-same	Mg2+ and Co2+ transporters			3	1, 2, 3
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
gs-sh	gs-sh	pfam-sh	all-same	ATP-dependent RNA helicase DbpA	3.6.4.13,5.99.1.-		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	tRNA s(2)C-32 sulfurtransferase	2.8.1.4		3	1, 2, 3
0	base_one HP	base_one HP	man-rest	MANUAL-REST			2	
lit-s	orth	gs-sh	all-same	Putative excisionase (DUF1233).			3	1, 2, 3
base_one miss	base_both miss	base_one miss	all-hp	hypothetical protein	HP		0	
gs-sh	map	pfam-sh	all-same	recombinase, phage RecT family			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Enterobacterial exodeoxyribonuclease VIII./PDDEXK-like domain of unknown function (DUF3799).	3.1.11.-		3	1, 2, 3
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
lit-s	0	0	majority	Rtr1/RPAP2 family.			3	1, 2
base_one HP	lit-s	base_one HP	all-same	Kil protein			2	1, 3
base_one HP	base_one HP	0	majority	Mobile element protein			1	
lit-s	lit-s	lit-s	all-same	Superinfection exclusion protein B.			3	1, 2, 3
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
base_one miss	base_both miss	base_one miss	majority	Uncharacterized protein conserved in bacteria, prophage-related			1	
base_one HP	base_one HP	lit-s	all-same	FIG00639855: hypothetical protein			0	2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00638968: hypothetical protein			0	2, 3
gs-sh	gs-sh	gs-sh	all-same	phage DNA replication protein (predicted replicative helicase loader)			3	1, 2, 3
base_one HP	base_one HP	gs-sh	all-same	Mn-dependent transcriptional regulator			2	2, 3
lit-s	0	0	majority	Bacteriophage lysis protein.			3	1, 2
gs-sh	lit-s	gs-sh	all-same	potassium uptake protein, TrkH family			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Predicted transcriptional regulators			3	1, 2, 3
base_one HP	0	base_one HP	majority	FIG00642729: hypothetical protein			1	
lit-s	0	0	majority	Prophage tail length tape measure protein.			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
base_one miss	0	base_one miss	man-rest	MANUAL-REST			2	
base_one miss	lit-s	base_one miss	all-same	FIG00638731: hypothetical protein			0	1, 3
base_one HP	lit-s	base_one HP	all-same	hypothetical protein			0	1, 3
base_one HP	0	base_one HP	majority	Phage tail fiber protein			1	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	Bacteriophage tail assembly protein			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	0	base_one HP	majority	FIG00640097: hypothetical protein			1	
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
base_one HP	base_one HP	tf_idf	all-same	Universal stress protein UspA and related nucleotide-binding proteins			2	2, 3
gs-sh	tf_idf	tf_idf	all-same	Outer membrane protein (porin)			3	1, 2, 3
base_tigr	gs-sh	map	all-same	pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	1.2.7.-		3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	Heat shock protein			3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_ec	base_lit-s	base_ec	all-same	Lactate dehydrogenase and related dehydrogenases	1.1.1.28		3	1, 2, 3
lit-s	map	gs-sh	all-same	Dicarboxylate transport.			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	YnbE-like lipoprotein.			3	1, 2, 3
base_one HP	base_one HP	gs-sh	all-same	"Putative uncharacterized protein ydbL, may be related to amine metabolism"			1	2, 3
gs-sh	lit-s	gs-sh	all-same	transcriptional regulator, AraC family			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	phenylacetaldehyde dehydrogenase (EC 1.2.1.39)	1.2.1.39		3	1, 2, 3
gs-sh	0	0	majority	tyramine oxidase	1.4.3.21,1.4.3.-		3	1, 2
base_lit-s	0	0	majority	phenylacetic acid degradation protein paaN			3	1, 2
gs-sh	gs-sh	lit-s	all-same	phenylacetate-CoA oxygenase, PaaG subunit			3	1, 2, 3
0	0	lit-s	majority	phenylacetate-CoA oxygenase, PaaH subunit			3	2, 3
gs-sh	gs-sh	lit-s	all-same	phenylacetate-CoA oxygenase, PaaI subunit			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	phenylacetate-CoA oxygenase, PaaJ subunit			3	1, 2, 3
0	0	lit-s	majority	phenylacetate-CoA oxygenase/reductase, PaaK subunit			3	2, 3
0	0	base_ec	majority	Enoyl-CoA hydratase/carnithine racemase	4.2.1.17		3	2, 3
base_tigr	base_ec	lit-s	all-same	phenylacetate degradation probable enoyl-CoA hydratase paaB			3	1, 2, 3
base_lit-s	base_lit-s	base_lit-s	all-same	3-hydroxyacyl-CoA dehydrogenase PaaC	1.1.1.157		3	1, 2, 3
base_lit-s	gs-sh	gs-sh	all-same	phenylacetic acid degradation protein PaaD	3.1.2.-		3	1, 2, 3
base_lit-s	0	0	majority	3-oxoadipyl-CoA thiolase	2.3.1.-		3	1, 2
base_tigr	base_ec	base_ec	all-same	phenylacetate-CoA ligase (EC 6.2.1.30)	6.2.1.30		3	1, 2, 3
base_tigr	lit-s	pfam-sh	all-same	transcriptional regulator, PaaX family			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	phenylacetic acid degradation protein PaaY			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
lit-s	0	0	majority	Autotransporter beta-domain.			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	lit-s	all-same	FIG00638289: hypothetical protein			0	2, 3
gs-sh	orth	orth	all-same	Phosphatidylglycerophosphate synthase			3	1, 2, 3
0	0	base_ec	majority	Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase	2.7.7.41		3	2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	orth	majority	Acyl carrier protein phosphodiesterase	1.7.-		3	2, 3
base_lit-s	base_lit-s	base_lit-s	all-same	ATP-dependent helicase HrpA	3.6.4.13		3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	Protein ydcF			2	1, 2, 3
base_lit-s	base_ec-d	base_ec-d	majority	lactaldehyde dehydrogenase	1.2.1.21, 1.2.1.22,1.2.1.22		3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	orth	all-same	Cytochrome B561			2	2, 3
lit-s	base_one HP	base_one HP	all-same	FIG00638461: hypothetical protein			0	1, 2
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
gs-sh	0	0	majority	methyl-accepting chemotaxis sensory transducer with TarH sensor			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	Transcriptional regulator			3	1, 2, 3
base_one HP	base_one HP	0	majority	Putative cytoplasmic protein			1	
gs-sh	orth	map	all-same	Periplasmic glucans biosynthesis protein			3	1, 2, 3
base_one HP	base_one HP	0	majority	YdcH protein			1	
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
gs-sh	0	0	majority	[LSU ribosomal protein L12P]-serine N-acetyltransferase (EC:2.3.1.-)	2.3.1.-		3	1, 2
gs-sh	lit-s	gs-sh	all-same	C4-dicarboxylate transporter/malic acid transport protein			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	tellurite resistance protein TehB			3	1, 2, 3
base_one HP	base_one HP	0	majority	Uncharacterized membrane lipoprotein clustered with tellurite resistance proteins TehA/TehB			1	
base_one miss	0	base_one miss	man-rest	MANUAL-REST			2	
base_one miss	base_both miss	base_one miss	majority	Transposase and inactivated derivatives			1	
base_tigr	0	0	majority	transposase, IS605 OrfB family, central region			3	1, 2
gs-sh	orth	orth	all-same	benzoate transporter			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	orth	all-same	Collagenase and related proteases	3.4.-		2	2, 3
base_one HP	base_one HP	lit-s	all-same	FIG01045143: hypothetical protein			0	2, 3
base_one miss	base_both miss	base_one miss	majority	YcfA-like protein.			1	
gs-sh	0	lit-s	all-same	FIG00638106: hypothetical protein			1	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	ABC-type spermidine/putrescine transport system, permease component I			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	ABC-type spermidine/putrescine transport system, permease component II			3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	1-pyrroline dehydrogenase	1.2.1.19		3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00638290: hypothetical protein			0	2, 3
base_one HP	base_one HP	lit-s	all-same	FIG01045262: hypothetical protein			0	2, 3
gs-sh	orth	0	all-same	Putative inner membrane protein			2	1, 2, 3
0	lit-s	0	majority	Sortase and related acyltransferases	2.3.1.183		3	1, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	gs-sh	lit-s	all-same	transcriptional regulator, GntR family			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	TonB-dependent siderophore receptor			3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00638561: hypothetical protein			0	2, 3
0	0	0	man-rest	MANUAL-REST			3	
lit-s	gs-sh	gs-sh	all-same	Glutathione S-transferase			3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	FIG00641231: hypothetical protein			0	1, 2
base_tigr	0	0	majority	RHS repeat-associated core domain			3	1, 2
base_one HP	base_one HP	base_lit-s	all-same	hypothetical protein			1	2, 3
gs-sh	gs-sh	base_lit-s	all-same	Transposase			3	1, 2, 3
gs-sh	0	0	majority	transposase, IS4 family			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	gs-sh	gs-sh	all-same	Uncharacterized protein, 4-oxalocrotonate tautomerase homolog	5.3.2.-		3	1, 2, 3
base_ec	base_lit-s	base_ec	all-same	Arylamine N-acetyltransferase	2.3.1.118		3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	phenazine biosynthesis protein PhzF family			2	2, 3
base_tigr	base_ec	base_ec	all-same	respiratory nitrate reductase gamma subunit	1.7.99.4		3	1, 2, 3
base_tigr	gs-sh	orth	all-same	respiratory nitrate reductase chaperone NarJ			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	respiratory nitrate reductase beta subunit	1.7.99.4		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	respiratory nitrate reductase alpha subunit apoprotein	1.7.99.4		3	1, 2, 3
gs-sh	gs-sh	map	all-same	nitrite extrusion protein (nitrite facilitator)			3	1, 2, 3
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
0	0	tf_idf	majority	Outer membrane protein (porin)			3	2, 3
gs-sh	orth	map	all-same	EamA-like transporter family.			3	1, 2, 3
0	base_one miss	base_one miss	man-rest	MANUAL-REST			2	
base_tigr	base_ec	base_ec	all-same	formate dehydrogenase (quinone-dependent) catalytic subunit	1.2.1.2		3	1, 2, 3
base_tigr	tf_idf	map	all-same	formate dehydrogenase (quinone-dependent) iron-sulfur subunit			3	1, 2, 3
base_lit-s	base_ec	tf_idf	all-same	formate dehydrogenase, gamma subunit			3	1, 2, 3
base_both miss	base_one HP	base_one HP	all-hp	hypothetical protein	HP		0	
base_lit-s	gs-sh	gs-sh	all-same	addiction module antidote protein, HigA family			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Zn-dependent alcohol dehydrogenases	1.1.1.1		3	1, 2, 3
base_ec	base_lit-s	base_ec	all-same	NAD-dependent malic enzyme (EC 1.1.1.38)	1.1.1.38		3	1, 2, 3
lit-s	0	0	majority	Putative biofilm-dependent modulation protein.			3	1, 2
lit-s	orth	map	all-same	peroxiredoxin, OsmC subfamily			3	1, 2, 3
base_tigr	map	gs-sh	all-same	oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain			3	1, 2, 3
base_tigr	map	gs-sh	all-same	oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_lit-s	0	0	majority	D-alanyl-D-alanine dipeptidase	3.4.13.22		3	1, 2
base_ec	0	0	majority	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)	3.1.4.52		3	1, 2
base_tigr	0	0	majority	diguanylate cyclase (GGDEF) domain	2.7.7.65		3	1, 2
base_one HP	base_one HP	0	majority	COG1649 predicted glycoside hydrolase			1	
base_tigr	gs-sh	map	all-same	glutamate:gamma-aminobutyrate antiporter, GGA family (TC 2.A.3.7.1)			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	glutamate decarboxylase (EC 4.1.1.15)	4.1.1.15		3	1, 2, 3
0	0	gs-sh	majority	Predicted Zn-dependent peptidases	3.4.24.-		3	2, 3
gs-sh	0	0	all-same	Outer membrane receptor proteins, mostly Fe transport			2	1, 2
gs-sh	gs-sh	gs-sh	all-same	ABC-type uncharacterized transport system, permease and ATPase components			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
pfam-sh	gs-sh	gs-sh	all-same	transcriptional regulator, AraC family			3	1, 2, 3
base_one HP	0	base_one HP	majority	FIG00638897: hypothetical protein			1	
gs-sh	0	0	majority	oxidoreductase alpha (molybdopterin) subunit			3	1, 2
gs-sh	0	0	majority	FimH, mannose binding./Fimbrial protein.			3	1, 2
gs-sh	0	0	majority	P pilus assembly protein, pilin FimA			3	1, 2
gs-sh	0	0	majority	P pilus assembly protein, pilin FimA			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
base_ec	pfam-sh	lit-s	all-same	HipA N-terminal domain	2.7.11.1		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Predicted transcriptional regulators			3	1, 2, 3
base_tigr	0	0	all-same	outer membrane autotransporter barrel domain			2	1, 2
0	0	0	man-rest	MANUAL-REST			2	
gs-sh	0	0	majority	Sugar (pentulose and hexulose) kinases	2.7.1.-		3	1, 2
gs-sh	0	0	majority	Transcriptional regulator, contains sigma factor-related N-terminal domain			3	1, 2
gs-sh	0	0	majority	autoinducer 2 ABC transporter ATP-binding protein			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	autoinducer 2-binding protein			3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	0	0	all-same	Autoinducer 2 (AI-2) modifying protein LsrG			2	1, 2
base_ec	base_ec	base_ec	all-same	Trans-aconitate methyltransferase	2.1.1.144		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			2	
0	0	base_ec	majority	tagaturonate reductase (EC 1.1.1.58)	1.1.1.58		3	2, 3
base_tigr	0	0	all-same	diguanylate cyclase (GGDEF) domain			2	1, 2
base_one HP	base_one HP	lit-s	all-same	FIG00637950: hypothetical protein			0	2, 3
base_tigr	base_ec	base_ec	all-same	L-glutaminase (EC 3.5.1.2)	3.5.1.2		3	1, 2, 3
gs-sh	base_ec-d	0	majority	succinate semialdehyde dehydrogenase	1.2.1.-,1.2.1.16		3	1, 2
gs-sh	gs-sh	gs-sh	all-same	Transcriptional regulator			3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	FIG00638496: hypothetical protein			0	1, 2
gs-sh	lit-s	map	all-same	Arabinose efflux permease			3	1, 2, 3
gs-sh	map	pfam-sh	all-same	membrane protein, MarC family			3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	Transcriptional regulators			3	1, 2, 3
gs-sh	lit-s	orth	all-same	transcriptional regulator, AraC family			3	1, 2, 3
lit-s	map	pfam-sh	all-same	MarB protein.			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	all-same	diguanylate cyclase (GGDEF) domain			2	1, 2
0	0	0	man-rest	MANUAL-REST			2	
base_tigr	pfam-sh	pfam-sh	all-same	competence/damage-inducible protein CinA C-terminal domain			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	peptidyl-dipeptidase Dcp (EC 3.4.15.5). Metallo peptidase. MEROPS family M03A	3.4.15.5		3	1, 2, 3
gs-sh	base_ec	map	all-same	Short-chain alcohol dehydrogenase of unknown specificity	1.1.1.-		3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	transcriptional regulator, GntR family			2	2, 3
gs-sh	0	0	all-same	putative selenium-binding protein YdfZ			2	1, 2
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	0	0	majority	metabolite-proton symporter			3	1, 2
base_one HP	0	base_one HP	majority	FIG00640097: hypothetical protein			1	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	Bacteriophage tail assembly protein			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
0	lit-s	0	majority	Phage DNA packaging protein, Nu1 subunit of terminase			3	1, 3
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
base_one miss	base_both miss	base_one miss	majority	Phage envelope protein			1	
lit-s	0	0	majority	GnsA/GnsB family.			3	1, 2
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
gs-sh	gs-sh	gs-sh	all-same	cold-shock DNA-binding protein family			3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00639844: hypothetical protein			0	2, 3
0	0	lit-s	majority	Phage-related lysozyme (muraminidase)			3	2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00639051: hypothetical protein			0	2, 3
lit-s	0	0	majority	Lysis protein S.			3	1, 2
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
gs-sh	0	0	majority	cold-shock DNA-binding protein family			3	1, 2
gs-sh	0	0	majority	cold-shock DNA-binding protein family			3	1, 2
gs-sh	0	0	majority	DnaJ-class molecular chaperone with C-terminal Zn finger domain			3	1, 2
base_one HP	base_one HP	0	majority	Phage antitermination protein Q			1	
lit-s	base_one HP	base_one HP	all-same	Hypothetical rem protein			1	1, 2
base_one miss	base_both miss	base_one miss	majority	Hok/gef family.			1	
base_one miss	base_both miss	base_one miss	majority	addiction module toxin, RelE/StbE family			1	
pfam-sh	pfam-sh	pfam-sh	all-same	addiction module antitoxin, RelB/DinJ family			3	1, 2, 3
lit-s	gs-sh	gs-sh	all-same	FlxA-like protein.			3	1, 2, 3
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
base_one HP	lit-s	base_one HP	all-same	hypothetical protein			0	1, 3
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
base_one miss	base_both miss	base_one miss	majority	Predicted transcriptional regulators			1	
base_one HP	base_one HP	0	majority	Mobile element protein			1	
lit-s	base_one HP	base_one HP	all-same	FIG00637981: hypothetical protein			0	1, 2
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
base_one HP	lit-s	base_one HP	all-same	hypothetical protein			0	1, 3
lit-s	gs-sh	gs-sh	all-same	DicB protein.			3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00637919: hypothetical protein			0	2, 3
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	gs-sh	gs-sh	all-same	D-mannonate dehydratase	4.2.1.8		3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	Protein of unknown function UPF0060			0	2, 3
base_one HP	base_one HP	0	majority	putative secreted protein			1	
gs-sh	base_ec	map	all-same	spermine/spermidine N-acetyltransferase	2.3.1.57,2.3.1.-		3	1, 2, 3
base_one HP	base_one HP	gs-sh	all-same	Hypothetical UPF0257 lipoprotein ynfC precursor			1	2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00639146: hypothetical protein			0	2, 3
gs-sh	0	0	majority	anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	1.97.1.9		3	1, 2
lit-s	0	0	majority	anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	1.97.1.9		3	1, 2
base_tigr	0	0	majority	DMSO reductase, iron-sulfur subunit			3	1, 2
lit-s	0	0	majority	DMSO reductase anchor subunit			3	1, 2
gs-sh	0	0	majority	Uncharacterized component of anaerobic dehydrogenases			3	1, 2
base_tigr	base_ec	base_ec	all-same	dethiobiotin synthase (EC 6.3.3.3)	6.3.3.3		3	1, 2, 3
gs-sh	0	0	all-same	Chloride channel protein EriC			2	1, 2
gs-sh	gs-sh	gs-sh	all-same	Transcriptional regulator/sugar kinase			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	transcriptional regulator, LysR family			3	1, 2, 3
gs-sh	orth	map	all-same	Arabinose efflux permease			3	1, 2, 3
lit-s	tf_idf	tf_idf	all-same	Acid shock protein repeat.			3	1, 2, 3
0	0	gs-sh	majority	V8-like Glu-specific endopeptidase	3.4.21.-		3	2, 3
0	0	orth	majority	Membrane transporters of cations and cationic drugs			3	2, 3
gs-sh	lit-s	orth	all-same	Membrane transporters of cations and cationic drugs			3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_ec	base_lit-s	base_ec	all-same	NAD/NADP transhydrogenase beta subunit	1.6.1.2		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	NAD(P) transhydrogenase, alpha subunit	1.6.1.2		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Protein ydgH precursor			2	1, 2, 3
0	0	gs-sh	majority	amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)			3	2, 3
gs-sh	orth	orth	all-same	Uncharacterized membrane protein required for alginate biosynthesis			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_ec	0	0	majority	Signal transduction histidine kinase	2.7.13.3		3	1, 2
base_tigr	base_ec	base_ec	all-same	fumarase, class II (EC 4.2.1.2)	4.2.1.2		3	1, 2, 3
base_tigr	base_lit-s	tf_idf	all-same	DNA replication terminus site binding protein			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	fumarase, class I, homodimeric (EC 4.2.1.2)	4.2.1.2		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	mannose-6-phosphate isomerase, type 1 (EC 5.3.1.8)	5.3.1.8		3	1, 2, 3
gs-sh	0	0	all-same	Putative GTP-binding protein YdgA			2	1, 2
gs-sh	0	0	majority	outer membrane porin, OprD family.			3	1, 2
base_one HP	base_one HP	orth	all-same	sugar (Glycoside-Pentoside-Hexuronide) transporter			2	2, 3
base_ec	base_ec	base_ec	all-same	Beta-galactosidase/beta-glucuronidase	3.2.1.31		3	1, 2, 3
gs-sh	0	0	majority	transcriptional regulator, TetR family			3	1, 2
base_ec	base_lit-s	base_ec	all-same	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	1.1.1.159		3	1, 2, 3
pfam-sh	0	0	majority	transcriptional regulator, LacI family			3	1, 2
0	tf_idf	0	majority	PTS system IIB component, Glc family (TC 4.A.1)/PTS system IIC component, Glc family (TC 4.A.1)			3	1, 3
base_ec	base_ec	base_ec	all-same	Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities	4.4.1.8		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	adenosine deaminase	3.5.4.4		3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	0	0	majority	Haemolysin expression modulating protein.			3	1, 2
gs-sh	orth	0	all-same	Putative inner membrane protein			2	1, 2, 3
base_lit-s	orth	orth	all-same	electron transport complex, RnfABCDGE type, A subunit			3	1, 2, 3
base_lit-s	0	0	majority	electron transport complex, RnfABCDGE type, B subunit			3	1, 2
base_lit-s	map	gs-sh	all-same	electron transport complex, RnfABCDGE type, C subunit			3	1, 2, 3
base_lit-s	0	0	majority	electron transport complex, RnfABCDGE type, D subunit			3	1, 2
base_lit-s	map	gs-sh	all-same	electron transport complex, RnfABCDGE type, G subunit			3	1, 2, 3
base_lit-s	orth	orth	all-same	electron transport complex, RnfABCDGE type, E subunit			3	1, 2, 3
base_tigr	base_ec	map	all-same	DNA-(apurinic or apyrimidinic site) lyase/endonuclease III	4.2.99.18,4.2.99.18, 3.2.2.-		3	1, 2, 3
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
base_tigr	0	0	majority	amino acid/peptide transporter (Peptide:H+ symporter), bacterial			3	1, 2
base_ec	base_ec	base_lit-s	all-same	Glutathione S-transferase	2.5.1.18		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	pyridoxal kinase	2.7.1.35		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	tyrosyl-tRNA synthetase (EC 6.1.1.1)	6.1.1.1		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	1.4.3.5		3	1, 2, 3
gs-sh	lit-s	map	all-same	Predicted periplasmic protein			3	1, 2, 3
gs-sh	lit-s	map	all-same	Predicted molecular chaperone distantly related to HSP70-fold metalloproteases			3	1, 2, 3
gs-sh	tf_idf	tf_idf	all-same	Outer membrane lipoprotein			3	1, 2, 3
gs-sh	lit-s	tf_idf	all-same	Transcriptional regulators			3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00638170: hypothetical protein			0	2, 3
base_tigr	0	0	majority	RND family efflux transporter, MFP subunit			3	1, 2
0	0	0	man-rest	MANUAL-REST			2	
base_ec	base_ec	base_ec	all-same	Cu/Zn superoxide dismutase	1.15.1.1		3	1, 2, 3
gs-sh	gs-sh	orth	all-same	Predicted oxidoreductase			3	1, 2, 3
base_one miss	base_both miss	base_one miss	majority	Predicted Fe-S protein			1	
gs-sh	gs-sh	lit-s	all-same	transcriptional regulator, TetR family			3	1, 2, 3
gs-sh	base_lit-s	map	all-same	NADH:flavin oxidoreductases, Old Yellow Enzyme family	1.-		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	lactoylglutathione lyase	4.4.1.5		3	1, 2, 3
base_tigr	lit-s	map	all-same	RNAse T (EC 3.1.13.-)	3.1.13.-		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_lit-s	base_one HP	base_one HP	all-same	monothiol glutaredoxin, Grx4 family			2	1, 2
base_one miss	base_one HP	base_one HP	majority	hypothetical protein			1	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_ec	base_ec	base_ec	all-same	Superoxide dismutase	1.15.1.1		3	1, 2, 3
gs-sh	orth	map	all-same	Arabinose efflux permease			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Transcriptional regulator			3	1, 2, 3
pfam-sh	map	orth	all-same	transcriptional regulator, LacI family			3	1, 2, 3
gs-sh	orth	map	all-same	drug resistance transporter, Bcr/CflA subfamily			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79)	2.1.1.79		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	riboflavin synthase alpha chain (EC 2.5.1.9)	2.5.1.9		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	putative efflux protein, MATE family			3	1, 2, 3
lit-s	0	0	all-same	Pertactin.			2	1, 2
gs-sh	gs-sh	gs-sh	all-same	Putative mono-oxygenase ydhR.			3	1, 2, 3
base_one HP	base_one HP	0	majority	Acyl-CoA dehydrogenases			1	
lit-s	base_one HP	base_one HP	all-same	FIG00639295: hypothetical protein			0	1, 2
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	0	base_one HP	majority	FIG00637966: hypothetical protein			1	
0	0	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	lit-s	all-same	FIG01045422: hypothetical protein			0	2, 3
base_tigr	base_ec	base_ec	all-same	pyruvate kinase (EC 2.7.1.40)	2.7.1.40		3	1, 2, 3
gs-sh	gs-sh	orth	all-same	Murein lipoprotein			3	1, 2, 3
0	lit-s	0	all-same	"L,D-transpeptidase YnhG"			2	1, 3
lit-s	map	pfam-sh	all-same	Cysteine desulfuration protein SufE			3	1, 2, 3
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
base_tigr	gs-sh	gs-sh	all-same	Iron-regulated ABC transporter permease protein SufD			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	Iron-regulated ABC transporter ATPase subunit SufC			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	Iron-regulated ABC transporter membrane component SufB			3	1, 2, 3
lit-s	0	0	majority	FeS assembly scaffold SufA			3	1, 2
lit-s	base_one HP	base_one HP	all-same	FIG00639040: hypothetical protein			0	1, 2
gs-sh	gs-sh	gs-sh	all-same	uncharacterized domain 1			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	lit-s	all-same	FIG00638201: hypothetical protein			0	2, 3
gs-sh	orth	map	all-same	Sugar phosphate permease			3	1, 2, 3
gs-sh	0	0	all-same	Sugar phosphate permease			2	1, 2
0	0	base_ec-d	man-rest	MANUAL-REST			3	
base_ec	base_ec	base_ec	all-same	3-dehydroquinate dehydratase (EC 4.2.1.10)	4.2.1.10		3	1, 2, 3
base_one HP	lit-s	base_one HP	all-same	propionate CoA-transferase	2.8.3.1		1	1, 3
gs-sh	gs-sh	map	all-same	Acyl-CoA dehydrogenases			3	1, 2, 3
pfam-sh	pfam-sh	lit-s	all-same	transcriptional regulator, AraC family			3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	FIG00638426: hypothetical protein			0	1, 2
0	0	lit-s	majority	electron transfer flavoprotein beta subunit			3	2, 3
0	0	tf_idf	majority	electron transfer flavoprotein alpha subunit apoprotein			3	2, 3
0	0	0	man-rest	MANUAL-REST			3	
orth	map	gs-sh	all-same	Ferredoxin-like protein			3	1, 2, 3
gs-sh	0	0	majority	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-		3	1, 2
base_tigr	base_ec	base_ec	all-same	phosphoenolpyruvate synthase (EC 2.7.9.2)	2.7.9.2		3	1, 2, 3
gs-sh	0	lit-s	all-same	FIG137360: hypothetical protein			1	1, 2, 3
base_tigr	base_ec	base_ec	all-same	3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54)	2.5.1.54		3	1, 2, 3
gs-sh	lit-s	map	all-same	Hemin uptake protein			3	1, 2, 3
base_one HP	base_one HP	0	majority	Selenoprotein O and cysteine-containing homologs			1	
gs-sh	0	0	all-same	FOG: EAL domain			2	1, 2
gs-sh	gs-sh	gs-sh	all-same	Cell wall-associated hydrolases (invasion-associated proteins)			3	1, 2, 3
base_ec	0	0	majority	ABC-type cobalamin transport system, ATPase component	3.6.3.33		3	1, 2
lit-s	lit-s	base_lit-s	all-same	Glutathione peroxidase	1.11.1.9		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	ABC-type cobalamin transport system, permease component			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	integration host factor, alpha subunit			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	phenylalanyl-tRNA synthetase beta subunit (EC 6.1.1.20)	6.1.1.20		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	phenylalanyl-tRNA synthetase, alpha subunit (EC 6.1.1.20)	6.1.1.20		3	1, 2, 3
base_tigr	map	lit-s	all-same	LSU ribosomal protein L20P			3	1, 2, 3
base_tigr	map	lit-s	all-same	LSU ribosomal protein L35P			3	1, 2, 3
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_tigr	gs-sh	map	all-same	bacterial translation initiation factor 3 (bIF-3)			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	threonyl-tRNA synthetase	6.1.1.3		3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same				0	1, 2
base_one HP	0	base_one HP	majority	FIG00638086: hypothetical protein			1	
base_one HP	base_one HP	orth	all-same	Putative salt-induced outer membrane protein			2	2, 3
base_ec	base_ec	base_ec	all-same	6-phosphofructokinase (EC 2.7.1.11)	2.7.1.11		3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00637864: hypothetical protein			0	2, 3
0	0	0	man-rest	MANUAL-REST			3	
lit-s	0	0	majority	YniB-like protein.			3	1, 2
gs-sh	0	0	majority	haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED			3	1, 2
gs-sh	0	0	all-same	Predicted membrane-bound metal-dependent hydrolases			2	1, 2
0	0	0	man-rest	MANUAL-REST			3	
lit-s	base_one HP	base_one HP	all-same	FIG00638395: hypothetical protein			0	1, 2
base_lit-s	lit-s	lit-s	all-same	cell division activator CedA			3	1, 2, 3
base_ec	base_ec	base_lit-s	all-same	Catalase	1.11.1.6		3	1, 2, 3
base_both miss	base_one HP	base_one HP	all-hp	hypothetical protein	HP		0	
gs-sh	0	0	all-same	Cellobiose phosphotransferase system YdjC-like protein			2	1, 2
base_ec	base_ec	base_ec	all-same	6-phospho-beta-glucosidase (EC 3.2.1.86)	3.2.1.86		3	1, 2, 3
gs-sh	gs-sh	pfam-sh	all-same	transcriptional regulator, AraC family			3	1, 2, 3
gs-sh	0	0	majority	PTS system N,N'-diacetylchitobiose-specific IIA component, Lac family (TC 4.A.3.2.1)	2.7.1.69		3	1, 2
gs-sh	orth	map	all-same	PTS system N,N'-diacetylchitobiose-specific IIC component, Lac family (TC 4.A.3.2.1)			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	PTS system N,N'-diacetylchitobiose-specific IIB component, Lac family (TC 4.A.3.2.1)	2.7.1.69		3	1, 2, 3
gs-sh	0	0	majority	Beta-barrel assembly machine subunit BamE			3	1, 2
base_ec	base_ec	base_ec	all-same	NH(3)-dependent NAD(+) synthetase (EC 6.3.1.5)	6.3.1.5		3	1, 2, 3
gs-sh	0	0	all-same	Conserved hypothetical protein (perhaps related to histidine degradation)			2	1, 2
lit-s	gs-sh	gs-sh	all-same	Excinuclease Cho	3.1.25.-		3	1, 2, 3
gs-sh	orth	map	all-same	P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	succinylglutamate desuccinylase (EC 3.5.1.96)	3.5.1.96		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	succinylarginine dihydrolase (EC 3.5.3.23)	3.5.3.23		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)	1.2.1.71		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	arginine succinyltransferase (EC 2.3.1.109)	2.3.1.109		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	acetylornithine and succinylornithine transaminases/succinylornithine transaminase family	2.6.1.81		3	1, 2, 3
base_one HP	lit-s	base_one HP	all-same	hypothetical protein			0	1, 3
base_lit-s	base_ec	base_ec	all-same	exodeoxyribonuclease III	3.1.11.2		3	1, 2, 3
base_one HP	base_one HP	gs-sh	all-same	DedA family inner membrane protein YdjX			1	2, 3
lit-s	base_one HP	base_one HP	all-same	Hypothetical protein YdjY			1	1, 2
base_one HP	base_one HP	0	majority	Alkaline phosphatase like protein			1	
0	0	lit-s	all-same	FIG00922551: hypothetical protein			1	2, 3
gs-sh	0	0	majority	ABC-type uncharacterized transport system, periplasmic component			3	1, 2
gs-sh	tf_idf	map	all-same	ABC-type uncharacterized transport system, permease component			3	1, 2, 3
0	tf_idf	0	majority	ABC-type uncharacterized transport system, ATPase component			3	1, 3
base_ec-d	base_ec	base_ec-d	majority	thiosulfate sulfurtransferase	2.8.1.1, 2.8.1.2,2.8.1.1		3	1, 3
gs-sh	gs-sh	lit-s	all-same	Phosphatidylglycerophosphate synthase			3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00638396: hypothetical protein			0	2, 3
gs-sh	gs-sh	gs-sh	all-same	ADP-ribose pyrophosphatase	3.6.1.-		3	1, 2, 3
base_ec	base_lit-s	base_ec	all-same	glutamate dehydrogenase (NADP) (EC 1.4.1.4)	1.4.1.4		3	1, 2, 3
gs-sh	0	lit-s	all-same	FIG00638567: hypothetical protein			1	1, 2, 3
base_ec	base_ec	base_ec	all-same	DNA topoisomerase III, bacteria and conjugative plasmid	5.99.1.2		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	selenophosphate synthase (EC 2.7.9.3)	2.7.9.3		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Nitroreductase			3	1, 2, 3
base_lit-s	gs-sh	orth	all-same	signal peptide peptidase SppA, 67K type	3.4.21.-		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	L-asparaginases, type I	3.5.1.1		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	Sugar phosphate permease			3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_tigr	0	0	majority	fructose-bisphosphate aldolase	4.1.2.13		3	1, 2
gs-sh	orth	map	all-same	Threonine dehydrogenase and related Zn-dependent dehydrogenases			3	1, 2, 3
gs-sh	0	0	majority	Sugar phosphate permease			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	majority	Uncharacterized protein YeaC			1	
base_ec	base_ec	base_ec	all-same	methionine-R-sulfoxide reductase	1.8.4.12		3	1, 2, 3
base_tigr	gs-sh	base_ec	all-same	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (EC 1.2.1.12)	1.2.1.12		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	gs-sh	map	all-same	Outer membrane protein V			3	1, 2, 3
lit-s	gs-sh	gs-sh	all-same	putative serine protein kinase, PrkA			3	1, 2, 3
base_one HP	base_one HP	0	majority	UPF0229 protein YeaH			1	
gs-sh	lit-s	orth	all-same	diguanylate cyclase (GGDEF) domain			3	1, 2, 3
base_tigr	map	pfam-sh	all-same	diguanylate cyclase (GGDEF) domain			3	1, 2, 3
gs-sh	0	0	all-same	Putative uncharacterized protein YeaK			2	1, 2
pfam-sh	pfam-sh	lit-s	all-same	transcriptional regulator, AraC family			3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_tigr	0	0	all-same	cyanate transporter			2	1, 2
base_one HP	base_one HP	lit-s	all-same	FIG00638254: hypothetical protein			0	2, 3
base_one HP	base_one HP	0	majority	Putative hemolysin			1	
0	0	0	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	orth	0	all-same	Putative cytoplasmic protein			2	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	0	0	majority	Putative threonine efflux protein			3	1, 2
gs-sh	0	0	majority	transcriptional regulator, LysR family			3	1, 2
base_lit-s	base_ec-d	base_ec-d	majority	tartrate dehydrogenase	1.1.1.83, 4.1.1.73, 1.1.1.93		3	1, 2
base_tigr	0	0	majority	choline/carnitine/betaine transport			3	1, 2
0	lit-s	0	majority	Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit			3	1, 3
0	0	0	man-rest	MANUAL-REST			3	
base_lit-s	base_ec-d	base_ec-d	majority	ribonuclease D	3.1.13.5		3	1, 2
base_one miss	base_ec	base_one miss	all-same	Long-chain-fatty-acid--CoA ligase	6.2.1.3		2	1, 3
base_tigr	0	0	majority	outer membrane lipoprotein, Slp family			3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	gs-sh	majority	Rad3-related DNA helicases			3	2, 3
gs-sh	0	0	majority	Putative translation initiation inhibitor, yjgF family			3	1, 2
0	0	lit-s	all-same	FIG00639292: hypothetical protein			1	2, 3
base_one HP	base_one HP	lit-s	all-same	FIG01046632: hypothetical protein			0	2, 3
base_tigr	base_ec	base_ec	all-same	aminodeoxychorismate synthase, subunit I (EC 2.6.1.85)	2.6.1.85		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	base_ec	base_ec	all-same	L-serine dehydratase, iron-sulfur-dependent, single chain form	4.3.1.17		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	gs-sh	all-same	Membrane protein TerC, possibly involved in tellurium resistance			2	2, 3
base_ec	base_ec-d	base_ec-d	majority	PTS system D-mannose-specific IIA component, Man family (TC 4.A.6.1.1)/PTS system D-mannose-specific IIB component, Man family (TC 4.A.6.1.1)	2.7.1.69		3	1, 2
base_tigr	0	0	majority	PTS system D-mannose-specific IIC component, Man family (TC 4.A.6.1.1)			3	1, 2
base_tigr	0	0	majority	PTS system D-mannose-specific IID component, Man family (TC 4.A.6.1.1)			3	1, 2
base_both miss	base_one miss	base_one miss	all-hp	hypothetical protein	HP		0	
base_one HP	lit-s	base_one HP	all-same	Predicted membrane protein			1	1, 3
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	lit-s	all-same	Predicted membrane protein			2	2, 3
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
gs-sh	gs-sh	gs-sh	all-same	cold-shock DNA-binding protein family			3	1, 2, 3
lit-s	0	0	all-same	YebO-like protein.			2	1, 2
lit-s	0	0	majority	YobH-like protein.			3	1, 2
gs-sh	0	0	majority	transcriptional regulator, IclR family			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	lit-s	gs-sh	all-same	Zn-dependent protease with chaperone function	3.4.24.-		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	C-terminal processing peptidase-1. Serine peptidase. MEROPS family S41A	3.4.21.102		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Activator of osmoprotectant transporter ProP			3	1, 2, 3
gs-sh	map	pfam-sh	all-same	GAF domain-containing protein			3	1, 2, 3
gs-sh	orth	map	all-same	integral membrane protein, PqiA family			3	1, 2, 3
base_one HP	base_one HP	base_lit-s	all-same	Paraquat-inducible protein B			2	2, 3
base_ec	lit-s	map	all-same	16S rRNA m(5)C-1407 methyltransferase (EC 2.1.1.178)	2.1.1.178		3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG01045311: hypothetical protein			0	2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00638765: hypothetical protein			0	2, 3
base_ec	0	0	majority	Diadenosine tetraphosphatase and related serine/threonine protein phosphatases	3.1.3.16		3	1, 2
base_one HP	base_one HP	0	majority	Putative periplasmic or exported protein			1	
gs-sh	orth	map	all-same	Putative copper export protein			3	1, 2, 3
gs-sh	0	0	majority	Uncharacterized protein, homolog of Cu resistance protein CopC			3	1, 2
base_ec	base_ec	base_ec	all-same	DNA polymerase III, theta subunit (EC 2.7.7.7)	2.7.7.7		3	1, 2, 3
0	0	lit-s	majority	Predicted amidohydrolase			3	2, 3
base_ec	base_ec	base_ec	all-same	oligopeptidase B (EC:3.4.21.83). Serine peptidase. MEROPS family S09A	3.4.21.83		3	1, 2, 3
gs-sh	gs-sh	lit-s	all-same	Exodeoxyribonuclease X (EC 3.1.11.-)	3.1.11.-		3	1, 2, 3
gs-sh	lit-s	0	all-same	FIG004088: inner membrane protein YebE			2	1, 2, 3
gs-sh	0	0	majority	YebF-like protein.			3	1, 2
gs-sh	orth	0	all-same	"DNA damage-inducible gene in SOS regulon, dependent on cyclic AMP and H-NS"			2	1, 2, 3
base_tigr	lit-s	map	all-same	formate-dependent phosphoribosylglycinamide formyltransferase	2.1.2.2,6.3.4.-		3	1, 2, 3
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
base_tigr	base_ec	base_ec	all-same	6-phosphogluconate dehydratase (EC 4.2.1.12)	4.2.1.12		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	1.1.1.49		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	transcriptional regulator, RpiR family			3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	pyruvate kinase	2.7.1.40		3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	2.3.1.-		3	1, 2, 3
gs-sh	0	0	majority	Membrane proteins related to metalloendopeptidases			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	ABC-type Zn2+ transport system, periplasmic component/surface adhesin			3	1, 2, 3
0	0	gs-sh	majority	ABC-type Mn/Zn transport systems, ATPase component	3.6.3.-		3	2, 3
gs-sh	gs-sh	gs-sh	all-same	ABC-type Mn2+/Zn2+ transport systems, permease components			3	1, 2, 3
base_tigr	lit-s	lit-s	all-same	Holliday junction DNA helicase subunit RuvB	3.6.4.12		3	1, 2, 3
base_tigr	lit-s	lit-s	all-same	Holliday junction DNA helicase subunit RuvA	3.6.4.12		3	1, 2, 3
base_one HP	base_one HP	0	majority	Orthopoxvirus protein of unknown function (DUF830).			1	
base_tigr	base_ec	base_ec	all-same	Holliday junction endonuclease RuvC (EC 3.1.22.4)	3.1.22.4		3	1, 2, 3
base_tigr	0	0	majority	DNA-binding regulatory protein, YebC/PmpR family			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	NTP pyrophosphohydrolases including oxidative damage repair enzymes	3.6.1.-		3	1, 2, 3
base_tigr	gs-sh	base_ec	all-same	aspartyl-tRNA synthetase, bacterial type	6.1.1.12		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	lit-s	all-same	FIG003003: hypothetical protein			0	2, 3
gs-sh	0	0	all-same	Uncharacterized relative of glutathione S-transferase, MAPEG superfamily			2	1, 2
base_tigr	gs-sh	gs-sh	all-same	methyltransferase, putative	2.1.1.-		3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	methyltransferase, putative	2.1.1.-		3	1, 2, 3
base_ec	base_ec-d	base_ec-d	majority	molybdopterin guanine dinucleotide-containing S/N-oxide reductases	1.7.2.3		3	1, 2
gs-sh	lit-s	map	all-same	Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit			3	1, 2, 3
gs-sh	pfam-sh	map	all-same	Uncharacterized protein involved in copper resistance			3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	Protein yecM			2	1, 2, 3
base_tigr	base_ec	base_ec	all-same	arginyl-tRNA synthetase (EC 6.1.1.19)	6.1.1.19		3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00639719: hypothetical protein			0	2, 3
lit-s	lit-s	lit-s	all-same	Flagellar protein FlhE.			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	flagellar biosynthesis protein FlhA			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	flagellar biosynthetic protein FlhB			3	1, 2, 3
gs-sh	pfam-sh	tf_idf	all-same	Chemotaxis protein			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains			3	1, 2, 3
gs-sh	gs-sh	base_ec	all-same	Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	3.1.1.61		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Methylase of chemotaxis methyl-accepting proteins	2.1.1.80		3	1, 2, 3
gs-sh	0	0	majority	methyl-accepting chemotaxis sensory transducer with TarH sensor			3	1, 2
gs-sh	0	0	majority	methyl-accepting chemotaxis sensory transducer with TarH sensor			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	Chemotaxis signal transduction protein			3	1, 2, 3
base_ec	gs-sh	lit-s	all-same	CheA signal transduction histidine kinase	2.7.13.3		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Flagellar motor protein			3	1, 2, 3
base_lit-s	gs-sh	gs-sh	all-same	flagellar motor stator protein MotA			3	1, 2, 3
pfam-sh	pfam-sh	lit-s	all-same	Flagellar transcriptional activator (FlhC).			3	1, 2, 3
tf_idf	tf_idf	lit-s	all-same	Flagellar transcriptional activator (FlhD).			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one miss	base_both miss	base_one miss	majority	Transposase and inactivated derivatives			1	
0	tf_idf	0	majority	Universal stress protein UspA and related nucleotide-binding proteins			3	1, 3
base_tigr	base_ec	base_ec	all-same	trehalose 6-phosphate synthase (EC 2.4.1.15)	2.4.1.15		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	trehalose 6-phosphatase (EC 3.1.3.12)	3.1.3.12		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_ec	tf_idf	tf_idf	all-same	L-arabinose ABC transporter ATP-binding protein	3.6.3.17		3	1, 2, 3
gs-sh	0	0	majority	L-arabinose-binding protein			3	1, 2
lit-s	map	orth	all-same	Ferritin-like protein			3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00510289: hypothetical protein			0	2, 3
base_one miss	base_one miss	0	majority	YecR-like lipoprotein.			1	
base_ec	0	0	majority	Ferritin-like protein	1.16.3.1		3	1, 2
base_one HP	base_one HP	0	majority	probable metal-binding protein			1	
gs-sh	lit-s	map	all-same	aromatic amino acid transport protein			3	1, 2, 3
base_lit-s	0	0	all-same	yecA family protein			2	1, 2
base_tigr	base_lit-s	base_ec	all-same	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)	2.7.8.5		3	1, 2, 3
base_tigr	lit-s	base_lit-s	all-same	Excinuclease ABC subunit C			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	two component transcriptional regulator, LuxR family			3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00634007: hypothetical protein			0	2, 3
gs-sh	0	0	majority	transcriptional activator SdiA			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	tf_idf	map	all-same	L-cystine ABC transporter membrane protein/Diaminopimelate ABC transporter membrane protein			3	1, 2, 3
base_ec	base_lit-s	base_ec	all-same	D-cysteine desulfhydrase (EC 4.4.1.15)	4.4.1.15		3	1, 2, 3
0	0	gs-sh	majority	L-cystine-binding protein/Diaminopimelate-binding protein			3	2, 3
base_lit-s	0	0	majority	flagellar regulatory protein FliZ			3	1, 2
gs-sh	base_lit-s	map	all-same	RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Flagellin and related hook-associated proteins			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Flagellar capping protein			3	1, 2, 3
base_tigr	lit-s	lit-s	all-same	flagellar biosynthetic protein FliS			3	1, 2, 3
lit-s	lit-s	lit-s	all-same	Flagellar protein FliT.			3	1, 2, 3
0	0	base_ec	majority	Glycosidases	3.2.1.1		3	2, 3
lit-s	0	0	all-same	YedD-like protein.			2	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	lit-s	base_one HP	all-same	Predicted redox protein, regulator of disulfide bond formation			1	1, 3
base_one HP	base_one HP	0	majority	Gifsy-2 prophage protein			1	
base_one HP	base_one HP	0	majority	N-acetylglutamate synthase and related acetyltransferases	2.3.1.-		1	
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
base_lit-s	lit-s	lit-s	all-same	flagellar hook-basal body complex protein FliE			3	1, 2, 3
base_tigr	lit-s	gs-sh	all-same	flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	flagellar motor switch protein FliG			3	1, 2, 3
gs-sh	pfam-sh	gs-sh	all-same	Flagellar biosynthesis/type III secretory pathway protein			3	1, 2, 3
base_lit-s	gs-sh	gs-sh	all-same	flagellar protein export ATPase FliI	3.6.3.14		3	1, 2, 3
base_lit-s	pfam-sh	pfam-sh	all-same	flagellar export protein FliJ			3	1, 2, 3
lit-s	orth	orth	all-same	Flagellar hook-length control protein			3	1, 2, 3
gs-sh	pfam-sh	gs-sh	all-same	Flagellar basal body-associated protein			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	flagellar motor switch protein FliM			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	flagellar motor switch protein FliN			3	1, 2, 3
base_lit-s	gs-sh	gs-sh	all-same	flagellar biosynthetic protein FliO			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	flagellar biosynthetic protein FliP			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	flagellar biosynthetic protein FliQ			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	flagellar biosynthetic protein FliR			3	1, 2, 3
gs-sh	0	0	majority	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain			3	1, 2
lit-s	0	0	majority	Dextransucrase DSRB.			3	1, 2
base_one HP	base_one HP	0	majority	putative cytoplasmic protein			1	
base_tigr	0	0	all-same	diguanylate cyclase (GGDEF) domain			2	1, 2
map	lit-s	base_ec	all-same	mannosyl-3-phosphoglycerate phosphatase-related protein	3.1.3.70		3	1, 2, 3
base_one HP	base_one HP	0	majority	Uncharacterized small protein			1	
gs-sh	0	0	all-same	Putative inner membrane protein			2	1, 2
gs-sh	0	0	majority	T/G mismatch-specific endonuclease	3.1.-,3.1.-.-		3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_ec	base_lit-s	base_ec	all-same	DNA-methyltransferase (dcm)	2.1.1.37		3	1, 2, 3
base_one HP	base_one HP	orth	all-same	Predicted HD superfamily hydrolase			2	2, 3
base_one HP	0	base_one HP	majority	FIG00638388: hypothetical protein			1	
0	0	0	man-rest	MANUAL-REST			3	
base_one miss	0	base_one miss	man-rest	MANUAL-REST			2	
0	0	tf_idf	majority	Outer membrane protein (porin)			3	2, 3
0	0	gs-sh	majority	chaperone Hsp31. Cysteine peptidase. MEROPS family C56			3	2, 3
gs-sh	0	0	majority	heavy metal sensor kinase	2.7.13.3		3	1, 2
gs-sh	0	0	majority	heavy metal response regulator			3	1, 2
base_lit-s	0	0	majority	hydroxyisourate hydrolase	3.5.2.17		3	1, 2
gs-sh	gs-sh	map	all-same	Sulfite oxidase and related enzymes			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	Predicted periplasmic or secreted protein			3	1, 2
base_one HP	base_one HP	orth	all-same	Cytochrome B561			2	2, 3
gs-sh	0	lit-s	all-same	FIG01220476: hypothetical protein			1	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	0	base_one HP	majority	FIG00638424: hypothetical protein			1	
base_tigr	0	0	majority	metabolite-proton symporter			3	1, 2
base_lit-s	base_lit-s	base_lit-s	all-same	AMP nucleosidase	3.2.2.4		3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_tigr	0	0	all-same	putative efflux protein, MATE family			2	1, 2
gs-sh	gs-sh	gs-sh	all-same	Transcriptional regulator			3	1, 2, 3
gs-sh	lit-s	orth	all-same	Transcriptional regulator			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			2	
base_tigr	base_ec	base_ec	all-same	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	2.4.2.21		3	1, 2, 3
base_tigr	gs-sh	map	all-same	cobalamin-5'-phosphate synthase (EC 2.7.8.26)	2.7.8.26		3	1, 2, 3
base_ec-d	base_ec	base_ec-d	majority	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase	2.7.7.62, 2.7.1.156,2.7.1.156, 2.7.7.62		3	1, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
0	0	0	man-rest	MANUAL-REST			3	
base_one miss	base_both miss	base_one miss	majority	Outer membrane receptor for ferrienterochelin and colicins			1	
0	0	0	man-rest	MANUAL-REST			3	
base_one miss	0	base_one miss	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			3	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
gs-sh	0	0	majority	Autotransporter beta-domain./Extended Signal Peptide of Type V secretion system.			3	1, 2
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	orth	all-same	DNA repair protein radc			2	2, 3
base_one HP	base_one HP	0	majority	Uncharacterized protein YeeT			1	
gs-sh	base_one HP	base_one HP	all-same	YagB/YeeU/YfjZ family.			2	1, 2
gs-sh	0	0	all-same	YeeV toxin protein			2	1, 2
lit-s	base_one HP	base_one HP	all-same	Uncharacterized protein YeeW			1	1, 2
base_one HP	base_one HP	0	majority	UPF0265 protein YeeX			1	
gs-sh	orth	map	all-same	Predicted membrane protein			3	1, 2, 3
gs-sh	map	orth	all-same	DNA gyrase inhibitor			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	penicillin-binding protein 6. Serine peptidase. MEROPS family S11	3.4.16.4		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Exodeoxyribonuclease I subunit C (EC 3.1.11.1)	3.1.11.1		3	1, 2, 3
gs-sh	0	0	all-same	Predicted redox protein, regulator of disulfide bond formation			2	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	0	0	majority	putrescine:proton symporter, AAT family (TC 2.A.3.1.13)			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	Transcriptional regulator			3	1, 2, 3
gs-sh	gs-sh	base_lit-s	all-same	Nucleoside-diphosphate-sugar epimerases			3	1, 2, 3
base_tigr	0	0	majority	toxin-antitoxin system, toxin component, Txe/YoeB family			3	1, 2
gs-sh	0	0	majority	prevent-host-death family protein			3	1, 2
base_lit-s	base_lit-s	base_lit-s	all-same	ATP phosphoribosyltransferase	2.4.2.17		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	histidinol dehydrogenase (EC 1.1.1.23)	1.1.1.23		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	histidinol phosphate aminotransferase apoenzyme (EC 2.6.1.9)	2.6.1.9		3	1, 2, 3
base_ec-d	base_ec-d	base_ec	majority	histidinol-phosphatase	3.1.3.15, 4.2.1.19		3	2, 3
base_tigr	gs-sh	gs-sh	all-same	imidazole glycerol phosphate synthase subunit hisH (EC 2.4.2.-)	2.4.2.-		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16)	5.3.1.16		3	1, 2, 3
lit-s	gs-sh	gs-sh	all-same	imidazole glycerol phosphate synthase subunit hisF (EC 4.1.3.-)	4.1.3.-		3	1, 2, 3
base_tigr	base_ec-d	base_ec-d	majority	phosphoribosyl-ATP pyrophosphatase/phosphoribosyl-AMP cyclohydrolase	3.5.4.19, 3.6.1.31,3.6.1.31, 3.5.4.19		3	1, 2
lit-s	gs-sh	orth	all-same	Chain length determinant protein			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	nucleotide sugar dehydrogenase	1.1.1.22		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	6-phosphogluconate dehydrogenase (decarboxylating) (EC 1.1.1.44)	1.1.1.44		3	1, 2, 3
base_one miss	base_both miss	base_one miss	majority	Predicted glycosyltransferases			1	
0	0	0	man-rest	MANUAL-REST			3	
0	lit-s	0	majority	Predicted glycosyltransferases			3	1, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one miss	base_both miss	base_one miss	majority	Acetyltransferase (isoleucine patch superfamily)	2.3.1.-		1	
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
base_tigr	base_lit-s	base_ec	all-same	UDP-galactopyranose mutase (EC 5.4.99.9)	5.4.99.9		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one miss	base_both miss	base_one miss	majority	dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13)	5.1.3.13		1	
base_ec	base_ec	base_ec	all-same	Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)	2.7.7.24		3	1, 2, 3
base_tigr	base_lit-s	base_ec	all-same	dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133)	1.1.1.133		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)	4.2.1.46		3	1, 2, 3
gs-sh	gs-sh	base_ec	all-same	UDP-glucose pyrophosphorylase regulatory subunit	2.7.7.9		3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	colanic acid biosynthesis protein WcaM			3	1, 2, 3
base_lit-s	0	0	majority	colanic acid biosynthesis glycosyltransferase WcaL			3	1, 2
base_lit-s	0	0	majority	colanic acid biosynthesis pyruvyl transferase WcaK			3	1, 2
gs-sh	lit-s	map	all-same	Membrane protein involved in the export of O-antigen and teichoic acid			3	1, 2, 3
lit-s	map	gs-sh	all-same	Undecaprenyl-phosphate glucose phosphotransferase			3	1, 2, 3
0	0	base_ec	majority	phosphomannomutase (EC 5.4.2.8)	5.4.2.8		3	2, 3
base_tigr	base_ec-d	base_ec-d	majority	mannose-1-phosphate guanylyltransferase (GDP)/mannose-6-phosphate isomerase, type 2	2.7.7.13,2.7.7.22, 5.3.1.8		3	1, 2
base_tigr	0	0	majority	colanic acid biosynthesis glycosyl transferase WcaI			3	1, 2
gs-sh	base_lit-s	map	all-same	ADP-ribose pyrophosphatase	3.6.1.-		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Nucleoside-diphosphate-sugar epimerases	1.1.1.271		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	GDP-mannose 4,6-dehydratase	4.2.1.47		3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	colanic acid biosynthesis acetyltransferase WcaF	2.3.1.-		3	1, 2, 3
base_tigr	map	lit-s	all-same	colanic acid biosynthesis glycosyl transferase WcaE	2.4.-		3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	putative colanic acid polymerase WcaD			3	1, 2, 3
base_tigr	map	lit-s	all-same	colanic acid biosynthesis glycosyl transferase WcaC	2.4.-		3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	colanic acid biosynthesis acetyltransferase WcaB	2.3.1.-		3	1, 2, 3
base_tigr	gs-sh	lit-s	all-same	colanic acid biosynthesis glycosyl transferase WcaA			3	1, 2, 3
gs-sh	lit-s	map	all-same	capsular exopolysaccharide family	2.7.10.-		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Protein-tyrosine-phosphatase	3.1.3.48		3	1, 2, 3
0	0	tf_idf	majority	Periplasmic protein involved in polysaccharide export			3	2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	lit-s	gs-sh	all-same	Uncharacterized protein involved in outer membrane biogenesis			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	dCTP deaminase (EC 3.5.4.13)	3.5.4.13		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	uridine kinase (EC 2.7.1.48)	2.7.1.48		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			2	
base_ec	base_ec	base_ec	all-same	DNA-3-methyladenine glycosylase II (EC 3.2.2.21)	3.2.2.21		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	lit-s	all-same	FIG00639186: hypothetical protein			0	2, 3
lit-s	0	0	majority	Protein phosphatase 2C.			3	1, 2
0	0	0	man-rest	MANUAL-REST			2	
base_tigr	0	0	majority	RND family efflux transporter, MFP subunit			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	Cation/multidrug efflux pump			3	1, 2
gs-sh	0	0	majority	drug resistance transporter, EmrB/QacA subfamily			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	Signal transduction histidine kinase	2.7.13.3		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one miss	0	base_one miss	majority	FIG00638368: hypothetical protein			1	
base_one HP	base_one HP	lit-s	all-same	FIG00638559: hypothetical protein			0	2, 3
0	0	tf_idf	majority	Collagenase and related proteases	3.4.-		3	2, 3
lit-s	0	0	majority	Ogr/Delta-like zinc finger.			3	1, 2
lit-s	base_one HP	base_one HP	all-same	FIG00639423: hypothetical protein			0	1, 2
base_lit-s	0	0	majority	lipid kinase YegS			3	1, 2
gs-sh	0	0	majority	Transcriptional regulators of sugar metabolism			3	1, 2
lit-s	0	0	majority	Transposase.			3	1, 2
gs-sh	0	0	majority	Transcriptional regulators of sugar metabolism			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
0	0	base_ec	majority	galactitol 1-phosphate 5-dehydrogenase (EC 1.1.1.251)	1.1.1.251		3	2, 3
gs-sh	orth	map	all-same	PTS system galactitol-specific EIIC component, Gat family (TC 4.A.5.1.1)			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	PTS system galactitol-specific EIIB component, Gat family (TC 4.A.5.1.1)	2.7.1.69		3	1, 2, 3
0	0	base_ec	majority	PTS system galactitol-specific EIIA component, Gat family (TC 4.A.5.1.1)	2.7.1.69		3	2, 3
base_tigr	base_ec-d	base_ec	all-same	tagatose-bisphosphate aldolase noncatalytic subunit	2.7.1.144		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_ec	base_ec	base_ec	all-same	fructose-bisphosphate aldolase (EC 4.1.2.13)	4.1.2.13		3	1, 2, 3
gs-sh	lit-s	orth	all-same	nucleoside transporter			3	1, 2, 3
lit-s	0	0	majority	ADP-ribosylglycohydrolase	3.2.-		3	1, 2
base_one HP	base_one HP	orth	all-same	transcriptional regulator, GntR family			2	2, 3
gs-sh	map	tf_idf	all-same	Sugar kinases, ribokinase family			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_ec-d	base_ec	base_ec-d	majority	hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	2.7.1.49, 2.7.4.7		3	1, 3
base_lit-s	base_ec	base_ec	all-same	hydroxyethylthiazole kinase	2.7.1.50		3	1, 2, 3
gs-sh	0	0	all-same	Uncharacterized protein YohL			2	1, 2
gs-sh	0	0	majority	ABC-type uncharacterized transport system, permease component			3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
lit-s	0	0	majority	Fimbrial protein.			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	lit-s	base_one HP	all-same	hypothetical protein			0	1, 3
gs-sh	0	0	majority	ATPases involved in chromosome partitioning			3	1, 2
base_ec	base_ec	base_ec	all-same	methionyl-tRNA synthetase (EC 6.1.1.10)	6.1.1.10		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			2	
base_one HP	lit-s	base_one HP	all-same	Molybdate metabolism regulator			2	1, 3
base_one HP	base_one HP	0	majority	Molybdate metabolism regulator			1	
base_one HP	base_one HP	0	majority	Molybdate metabolism regulator			1	
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
0	0	0	man-rest	MANUAL-REST			2	
lit-s	base_one HP	base_one HP	all-same	FIG00765533: hypothetical protein			0	1, 2
0	0	0	man-rest	MANUAL-REST			3	
lit-s	0	0	majority	SWIM zinc finger.			3	1, 2
base_one miss	lit-s	base_one miss	all-same	YehQ protein			2	1, 3
base_one HP	base_one HP	gs-sh	all-same	Hypothetical lipoprotein yehR			1	2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00638377: hypothetical protein			0	2, 3
map	orth	gs-sh	all-same	two component transcriptional regulator, LytTR family			3	1, 2, 3
0	0	orth	majority	Putative regulator of cell autolysis	2.7.13.3		3	2, 3
gs-sh	gs-sh	gs-sh	all-same	Predicted transcriptional regulators			3	1, 2, 3
gs-sh	0	0	majority	ABC-type proline/glycine betaine transport systems, permease component			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	ABC-type proline/glycine betaine transport systems, permease component			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
base_ec	base_ec	base_ec	all-same	beta-glucosidase (EC:3.2.1.21)	3.2.1.21		3	1, 2, 3
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
base_ec	base_ec-d	base_ec-d	majority	FAD/FMN-containing dehydrogenases	1.1.1.28		3	1, 2
gs-sh	gs-sh	map	all-same	murein-DD-endopeptidase. Serine peptidase. MEROPS family S11	3.4.21.-		3	1, 2, 3
gs-sh	orth	0	all-same	Putative membrane protein			2	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Uncharacterized membrane-associated protein			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	0	0	majority	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family			3	1, 2
base_one HP	base_one HP	base_one miss	majority	"RND efflux system, outer membrane lipoprotein, NodT family"			1	
gs-sh	base_lit-s	gs-sh	all-same	tRNA-U20a,U20b-dihydrouridine synthase	1.-		3	1, 2, 3
gs-sh	gs-sh	pfam-sh	all-same	Putative effector of murein hydrolase LrgA			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	LrgA-associated membrane protein LrgB			2	1, 2, 3
base_tigr	base_ec	base_ec	all-same	cytidine deaminase (EC 3.5.4.5)	3.5.4.5		3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	lit-s	all-same	FIG00638799: hypothetical protein			0	2, 3
gs-sh	0	0	majority	NADPH-dependent glutamate synthase beta chain and related oxidoreductases			3	1, 2
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_ec	base_ec	base_ec	all-same	glucose ABC transporter ATP-binding protein/galactose ABC transporter ATP-binding protein	3.6.3.17		3	1, 2, 3
gs-sh	0	0	majority	glucose-binding protein/galactose-binding protein			3	1, 2
gs-sh	0	0	majority	transcriptional regulator, LacI family			3	1, 2
base_one HP	base_one HP	0	majority	Predicted membrane protein			1	
base_tigr	base_ec	base_ec	all-same	GTP cyclohydrolase I (EC 3.5.4.16)	3.5.4.16		3	1, 2, 3
base_lit-s	base_lit-s	base_lit-s	all-same	S-formylglutathione hydrolase	3.1.2.12		3	1, 2, 3
gs-sh	gs-sh	map	all-same	Outer membrane receptor for ferrienterochelin and colicins			3	1, 2, 3
gs-sh	lit-s	map	all-same	lysine:proton symporter, AAT family (TC 2.A.3.1.2)			3	1, 2, 3
base_one HP	lit-s	base_one HP	all-same	hypothetical protein			0	1, 3
gs-sh	gs-sh	gs-sh	all-same	Transcriptional regulator			3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_tigr	map	base_lit-s	all-same	Endonuclease IV	3.1.21.2,3.1.21.-		3	1, 2, 3
gs-sh	map	orth	all-same	Sugar kinases, ribokinase family			3	1, 2, 3
gs-sh	0	0	majority	nucleoside transporter			3	1, 2
base_ec	base_ec-d	base_ec-d	majority	Inosine-uridine nucleoside N-ribohydrolase	3.2.2.8		3	1, 2
gs-sh	gs-sh	map	all-same	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	gs-sh	map	all-same	Uncharacterized enzyme involved in pigment biosynthesis			3	1, 2, 3
gs-sh	base_ec	map	all-same	Sugar kinases, ribokinase family			3	1, 2, 3
0	base_ec-d	0	man-rest	MANUAL-REST			3	
base_ec	base_lit-s	base_ec	all-same	fructose-1-phosphate kinase (EC 2.7.1.56)	2.7.1.56		3	1, 2, 3
base_tigr	0	0	majority	Phosphocarrier protein HPr/PTS system D-fructose-specific IIA component (F1P-forming), Frc family (TC 4.A.2.1.1)			3	1, 2
gs-sh	gs-sh	map	all-same	Flagellin N-methylase.			3	1, 2, 3
gs-sh	lit-s	orth	all-same	sugar efflux transporter			3	1, 2, 3
base_one miss	0	base_one miss	majority	FIG00638093: hypothetical protein			1	
gs-sh	0	0	majority	elongation factor P-like protein YeiP			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	Putative GTPases (G3E family)			3	1, 2
gs-sh	orth	map	all-same	lipid-A kinase			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	spr peptidase. Cysteine peptidase. MEROPS family C40			3	1, 2, 3
lit-s	0	0	majority	FOG: EAL domain			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	gs-sh	gs-sh	all-same	ABC-type uncharacterized transport system, permease component			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	ABC-type uncharacterized transport system, permease component			3	1, 2, 3
gs-sh	0	0	majority	ABC-type uncharacterized transport system, duplicated ATPase component			3	1, 2
lit-s	0	0	all-same	YejG-like protein.			2	1, 2
gs-sh	0	0	majority	drug resistance transporter, Bcr/CflA subfamily			3	1, 2
base_lit-s	base_ec-d	lit-s	all-same	ribosomal small subunit pseudouridine synthase A	5.4.99.19,5.4.99.-		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	orth	lit-s	all-same	LSU ribosomal protein L25P			3	1, 2, 3
gs-sh	map	orth	all-same	Nucleoid-associated protein			3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG002927: hypothetical protein			0	2, 3
gs-sh	map	lit-s	all-same	Predicted hydrolase of alkaline phosphatase superfamily			3	1, 2, 3
base_tigr	0	0	majority	outer membrane autotransporter barrel domain			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	two component transcriptional regulator, LuxR family			3	1, 2
gs-sh	pfam-sh	map	all-same	Cytochrome c biogenesis factor			3	1, 2, 3
gs-sh	0	0	majority	periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily			3	1, 2
base_tigr	gs-sh	gs-sh	all-same	c-type cytochrome biogenesis protein CcmF			3	1, 2, 3
lit-s	pfam-sh	pfam-sh	all-same	Cytochrome c-type biogenesis protein CcmE			3	1, 2, 3
base_lit-s	pfam-sh	pfam-sh	all-same	heme exporter protein CcmD			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	heme exporter protein CcmC			3	1, 2, 3
base_lit-s	pfam-sh	pfam-sh	all-same	heme exporter protein CcmB			3	1, 2, 3
base_lit-s	gs-sh	gs-sh	all-same	heme ABC exporter, ATP-binding protein CcmA	3.6.3.41		3	1, 2, 3
base_tigr	0	0	majority	periplasmic nitrate reductase subunit NapC			3	1, 2
pfam-sh	0	0	majority	periplasmic nitrate reductase subunit NapB			3	1, 2
base_tigr	gs-sh	gs-sh	all-same	periplasmic nitrate reductase subunit NapH			3	1, 2, 3
base_tigr	0	0	majority	periplasmic nitrate reductase subunit NapG			3	1, 2
base_ec	base_ec	base_ec	all-same	periplasmic nitrate reductase subunit NapA apoprotein	1.7.99.4		3	1, 2, 3
gs-sh	gs-sh	pfam-sh	all-same	periplasmic nitrate reductase chaperone NapD			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	periplasmic nitrate reductase maturation protein NapF			3	1, 2, 3
base_one HP	0	base_one HP	majority	FIG00640962: hypothetical protein			1	
0	tf_idf	0	majority	Serine protease inhibitor ecotin			3	1, 3
base_tigr	base_ec	base_ec	all-same	malate:quinone-oxidoreductase	1.1.5.4		3	1, 2, 3
gs-sh	orth	orth	all-same	cyclic peptide transporter			3	1, 2, 3
base_tigr	lit-s	map	all-same	DNA-N1-methyladenine dioxygenase (EC 1.14.11.-)	1.14.11.-		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	DNA-O6-methylguanine--protein-cysteine S-methyltransferase (EC 2.1.1.63)/Transcriptional regulator Ada	2.1.1.63		3	1, 2, 3
gs-sh	pfam-sh	gs-sh	all-same	Membrane-associated lipoprotein involved in thiamine biosynthesis			3	1, 2, 3
gs-sh	orth	tf_idf	all-same	Outer membrane protein (porin)			3	1, 2, 3
base_ec	0	0	majority	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Hpt domain.	2.7.13.3		3	1, 2
gs-sh	0	0	majority	two component transcriptional regulator, LuxR family			3	1, 2
base_ec	pfam-sh	map	all-same	Signal transduction histidine kinase	2.7.13.3		3	1, 2, 3
base_tigr	map	gs-sh	all-same	PAS/PAC sensor signal transduction histidine kinase (EC 2.7.13.3)	2.7.13.3		3	1, 2, 3
pfam-sh	map	gs-sh	all-same	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	3-oxoacid CoA-transferase, A subunit	2.8.3.8		3	1, 2, 3
gs-sh	base_ec	map	all-same	3-oxoacid CoA-transferase, B subunit			3	1, 2, 3
gs-sh	gs-sh	0	all-same	Short chain fatty acids transporter			2	1, 2, 3
base_tigr	map	base_ec	all-same	acetyl-CoA acetyltransferase (EC 2.3.1.9)	2.3.1.9		3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00638718: hypothetical protein			0	2, 3
0	0	0	man-rest	MANUAL-REST			2	
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	lit-s	all-same	FIG00638487: hypothetical protein			0	2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00638699: hypothetical protein			0	2, 3
base_tigr	base_ec	base_ec	all-same	DNA gyrase subunit A (EC 5.99.1.3)	5.99.1.3		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	3-demethylubiquinone-9 3-methyltransferase	2.1.1.64		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	base_ec	base_ec	all-same	ribonucleoside-diphosphate reductase class Ia alpha subunit (EC 1.17.4.1)	1.17.4.1		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	ribonucleoside-diphosphate reductase class Ia beta subunit (EC 1.17.4.1)	1.17.4.1		3	1, 2, 3
0	0	lit-s	majority	Ferredoxin			3	2, 3
gs-sh	lit-s	gs-sh	all-same	Lipopolysaccharide kinase (Kdo/WaaP) family.			3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	LysR family transcriptional regulator STM2281			1	1, 2
base_ec	base_ec	base_ec	all-same	Glycerophosphoryl diester phosphodiesterase	3.1.4.46		3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	glycerol-3-phosphate transporter			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	glycerol 3-phosphate dehydrogenase (quinone) subunit A (EC 1.1.5.3)	1.1.5.3		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	glycerol 3-phosphate dehydrogenase (quinone) subunit B (EC 1.1.5.3)	1.1.5.3		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	glycerol 3-phosphate dehydrogenase (quinone) subunit C (EC 1.1.5.3)	1.1.5.3		3	1, 2, 3
base_tigr	0	0	all-same	conserved hypothetical protein (putative transposase or invertase)			2	1, 2
lit-s	lit-s	base_lit-s	all-same	hypothetical protein			0	1, 2, 3
gs-sh	0	0	majority	2,4-dihydroxyhept-2-enedioate aldolase (EC 4.1.2.-)	4.1.2.-		3	1, 2
gs-sh	0	0	majority	Sugar phosphate permease			3	1, 2
base_ec	base_lit-s	base_ec	all-same	L-rhamnonate dehydratase (EC 4.2.1.90)	4.2.1.90		3	1, 2, 3
base_one HP	base_one HP	orth	all-same	transcriptional regulator, IclR family			2	2, 3
gs-sh	gs-sh	gs-sh	all-same	molybdenum cofactor synthesis domain/competence/damage-inducible protein CinA N-terminal domain			3	1, 2, 3
gs-sh	map	lit-s	all-same	YfaZ precursor.			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_ec	base_lit-s	map	all-same	Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis	2.6.1.87		3	1, 2, 3
base_ec	0	0	majority	Glycosyltransferases involved in cell wall biogenesis	2.7.8.30		3	1, 2
base_ec-d	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_ec	0	0	majority	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family	2.4.2.43		3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	map	lit-s	all-same	Polymyxin resistance protein PmrD.			3	1, 2, 3
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
base_tigr	base_ec	base_ec	all-same	2-succinylbenzoyl-CoA synthetase (EC 6.2.1.26)	6.2.1.26		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	O-succinylbenzoate synthase (EC 4.2.1.113)	4.2.1.113		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	1,4-Dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36)	4.1.3.36		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)	4.2.99.20		3	1, 2, 3
base_tigr	base_lit-s	base_ec	all-same	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase (EC 2.2.1.9)	2.2.1.9		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	isochorismate synthase (EC 5.4.4.2)	5.4.4.2		3	1, 2, 3
gs-sh	lit-s	0	all-same	ElaB protein			2	1, 2, 3
orth	gs-sh	gs-sh	all-same	Predicted acyltransferase			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	RNAse Z (EC 3.1.26.11)	3.1.26.11		3	1, 2, 3
gs-sh	orth	map	all-same	Protease, Ulp1 family			3	1, 2, 3
base_one HP	base_one HP	0	majority	Uncharacterized protein containing a von Willebrand factor type A (vWA) domain			1	
0	0	0	man-rest	MANUAL-REST			2	
gs-sh	0	lit-s	all-same	FIG00638014: hypothetical protein			1	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	FIG00640159: hypothetical protein			0	1, 2
lit-s	base_one HP	base_one HP	all-same	FIG00640594: hypothetical protein			0	1, 2
0	0	0	man-rest	MANUAL-REST			2	
base_ec-d	base_ec-d	base_ec	majority	NADH dehydrogenase subunit N (EC 1.6.5.3)	1.6.5.3		3	2, 3
base_ec-d	base_ec-d	base_ec	majority	NADH dehydrogenase subunit M (EC 1.6.5.3)	1.6.5.3		3	2, 3
base_ec-d	base_ec-d	base_ec	majority	NADH dehydrogenase subunit L (EC 1.6.5.3)	1.6.5.3		3	2, 3
base_ec-d	base_ec-d	base_ec	majority	NADH dehydrogenase subunit K (EC 1.6.5.3)	1.6.5.3		3	2, 3
base_ec-d	base_ec-d	base_ec	majority	NADH dehydrogenase subunit J (EC 1.6.5.3)	1.6.5.3		3	2, 3
base_tigr	map	base_ec	all-same	NADH dehydrogenase subunit I (EC 1.6.5.3)	1.6.5.3		3	1, 2, 3
base_ec-d	base_ec-d	base_ec	majority	NADH dehydrogenase subunit H (EC 1.6.5.3)	1.6.5.3		3	2, 3
base_tigr	base_ec-d	base_ec	all-same	NADH dehydrogenase subunit G (EC 1.6.5.3)	1.6.5.3		3	1, 2, 3
base_tigr	base_ec-d	base_ec	all-same	NADH dehydrogenase subunit F (EC 1.6.5.3)	1.6.5.3		3	1, 2, 3
base_ec-d	base_ec-d	base_ec	majority	NADH dehydrogenase subunit E (EC 1.6.5.3)	1.6.5.3		3	2, 3
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
base_ec-d	base_ec-d	base_ec	majority	NADH dehydrogenase subunit B (EC 1.6.5.3)	1.6.5.3		3	2, 3
0	0	base_ec	majority	NADH dehydrogenase subunit A (EC 1.6.5.3)	1.6.5.3		3	2, 3
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
gs-sh	gs-sh	gs-sh	all-same	Transcriptional regulator			3	1, 2, 3
base_one HP	base_one HP	base_ec-d	man-rest	MANUAL-REST			2	
base_ec	0	0	majority	Predicted hydrolases of HD superfamily	3.1.3.5		3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	lit-s	all-same	FIG00361523: hypothetical protein			0	2, 3
base_one HP	lit-s	base_one HP	all-same	hypothetical protein			0	1, 3
base_tigr	base_ec	base_ec	all-same	acetate kinase (EC 2.7.2.1)	2.7.2.1		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	phosphotransacetylase (EC 2.3.1.8)	2.3.1.8		3	1, 2, 3
orth	orth	orth	all-same	Predicted membrane protein			3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	lit-s	gs-sh	all-same	phosphoesterase, MJ0936 family			3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	map	base_ec	all-same	Glutathione S-transferase	2.5.1.18		3	1, 2, 3
gs-sh	0	0	majority	FolB domain	5.-		3	1, 2
0	0	0	man-rest	MANUAL-REST			2	
base_tigr	0	0	all-same	conserved hypothetical protein (putative transposase or invertase)			2	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	gs-sh	gs-sh	all-same	L-histidine ABC transporter membrane protein/L-arginine ABC transporter membrane protein/L-lysine ABC transporter membrane protein/L-ornithine ABC transporter membrane protein			3	1, 2, 3
gs-sh	gs-sh	map	all-same	L-histidine ABC transporter membrane protein/L-arginine ABC transporter membrane protein/L-lysine ABC transporter membrane protein/L-ornithine ABC transporter membrane protein			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	L-histidine-binding protein			3	1, 2, 3
gs-sh	0	0	majority	L-arginine-binding protein/L-lysine-binding protein/L-ornithine-binding protein			3	1, 2
base_tigr	map	gs-sh	all-same	3-octaprenyl-4hydroxybenzoate decarboxylase (EC 4.1.1.-)	4.1.1.-		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	amidophosphoribosyltransferase (EC 2.4.2.14)	2.4.2.14		3	1, 2, 3
gs-sh	lit-s	tf_idf	all-same	Uncharacterized membrane protein, required for colicin V production			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			2	
base_ec-d	base_ec-d	base_ec	majority	folylpolyglutamate synthase/dihydrofolate synthase	6.3.2.12, 6.3.2.17		3	2, 3
base_tigr	base_ec	base_ec	all-same	acetyl-CoA carboxylase carboxyltransferase subunit alpha	6.4.1.2		3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	Uncharacterized membrane-associated protein			3	1, 2, 3
base_tigr	base_ec-d	base_ec-d	majority	pseudouridylate synthase I	5.4.99.12		3	1, 2
0	0	base_lit-s	majority	Aspartate-semialdehyde dehydrogenase			3	2, 3
base_ec	base_ec	base_ec	all-same	4-phosphoerythronate dehydrogenase (EC 1.1.1.290)	1.1.1.290		3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	orth	base_one HP	all-same	Cell division protein			2	1, 3
base_ec	base_ec	base_ec	all-same	3-oxoacyl-[acyl-carrier-protein] synthase I (EC 2.3.1.41)	2.3.1.41		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain	1.5.-, 2.1.1.61		3	1, 2, 3
lit-s	0	0	all-same	YfcL protein.			2	1, 2
base_one HP	base_one HP	0	majority	Putative transporting ATPase			1	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	gs-sh	map	all-same	murein endopeptidase. Metallo peptidase. MEROPS family M74	3.4.24.-		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	chorismate synthase (EC 4.2.3.5)	4.2.3.5		3	1, 2, 3
gs-sh	0	0	majority	[LSU ribosomal protein L3P]-glutamine N5-methyltransferase	2.1.1.72,2.1.1.-		3	1, 2
0	0	lit-s	all-same	FIG001674: hypothetical protein			1	2, 3
base_one HP	base_one HP	0	majority	Uncharacterized protein YadU in stf fimbrial cluster			1	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	lit-s	lit-s	all-same	phosphohistidine phosphatase, SixA	3.1.3.-		3	1, 2, 3
base_lit-s	base_ec-d	base_ec-d	majority	fatty oxidation complex, alpha subunit FadJ	1.1.1.35, 4.2.1.17, 5.1.2.3		3	1, 2
base_ec	base_ec-d	base_ec-d	majority	3-ketoacyl-CoA thiolase	2.3.1.16		3	1, 2
base_one HP	lit-s	base_one HP	all-same	FIG00637865: hypothetical protein			0	1, 3
0	0	base_lit-s	majority	Long-chain fatty acid transport protein			3	2, 3
lit-s	base_one HP	base_one HP	all-same	FIG00639023: hypothetical protein			0	1, 2
gs-sh	0	0	majority	Surface lipoprotein			3	1, 2
gs-sh	gs-sh	orth	all-same	Formate/nitrite family of transporters			3	1, 2, 3
orth	tf_idf	tf_idf	all-same	Integrase			3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
lit-s	base_one HP	base_one HP	all-same	Caudovirales tail fibre assembly protein.			2	1, 2
lit-s	0	0	majority	Caudovirales tail fibre assembly protein.			3	1, 2
lit-s	base_one HP	base_one HP	all-same	Phage tail fiber protein			1	1, 2
base_lit-s	0	0	majority	phage N-6-adenine-methyltransferase			3	1, 2
lit-s	base_one miss	base_one miss	all-same	PerC transcriptional activator.			2	1, 2
lit-s	base_one HP	base_one HP	all-same	Primosomal protein I			1	1, 2
base_one miss	0	base_one miss	majority	FIG00644878: hypothetical protein			1	
lit-s	base_one HP	base_one HP	all-same	FIG00638873: hypothetical protein			0	1, 2
base_one HP	base_one HP	lit-s	all-same	FIG00642676: hypothetical protein			0	2, 3
base_one HP	base_one HP	gs-sh	all-same	Predicted hydrolases of HD superfamily			2	2, 3
lit-s	base_one HP	base_one HP	all-same	Eae protein			1	1, 2
lit-s	base_one HP	base_one HP	all-same	FIG00643426: hypothetical protein			0	1, 2
0	0	0	man-rest	MANUAL-REST			3	
base_lit-s	0	0	majority	D-serine deaminase transcriptional activator			3	1, 2
gs-sh	map	lit-s	all-same	D-serine permease DsdX (TC 2.A.8.1.5)			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	D-serine ammonia-lyase (EC 4.3.1.18)	4.3.1.18		3	1, 2, 3
gs-sh	0	0	majority	drug resistance transporter, EmrB/QacA subfamily			3	1, 2
base_tigr	0	0	majority	efflux pump membrane protein (multidrug resistance protein A)			3	1, 2
gs-sh	lit-s	orth	all-same	two component transcriptional regulator, LuxR family			3	1, 2, 3
base_ec	0	0	majority	amino acid-binding domain sensor hybrid histidine kinase (EC 2.7.13.3)	2.7.13.3		3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_lit-s	base_ec	base_ec	all-same	oxalyl-CoA decarboxylase	4.1.1.8		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	formyl-CoA transferase	2.8.3.16		3	1, 2, 3
lit-s	0	0	all-same	YfdX protein.			2	1, 2
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
base_one HP	base_one HP	lit-s	all-same	FIG00638164: hypothetical protein			0	2, 3
gs-sh	lit-s	tf_idf	all-same	lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase	2.3.1.-		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	gs-sh	majority	Putative regulator of cell autolysis	2.7.13.3		3	2, 3
gs-sh	gs-sh	gs-sh	all-same	two component transcriptional regulator, LytTR family			3	1, 2, 3
base_one HP	base_one HP	gs-sh	all-same	transcriptional regulator, AraC family			2	2, 3
gs-sh	0	base_ec-d	majority	phosphoenolpyruvate-protein phosphotransferase	2.7.1.69		3	1, 2
gs-sh	0	0	majority	Cellulase M and related proteins			3	1, 2
gs-sh	0	0	majority	Xaa-Pro aminopeptidase	3.4.11.-		3	1, 2
gs-sh	0	0	majority	PTS system unknown substrate IIC component, Fru family (TC 4.A.2.1.11)			3	1, 2
base_ec	gs-sh	gs-sh	all-same	PTS system unknown substrate IIB component, Fru family (TC 4.A.2.1.11)	2.7.1.69		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	glucokinase (EC 2.7.1.2)	2.7.1.2		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	lit-s	all-same	FIG00639029: hypothetical protein			0	2, 3
gs-sh	lit-s	map	all-same	NRAMP (natural resistance-associated macrophage protein) metal ion transporters			3	1, 2, 3
gs-sh	lit-s	map	all-same	nucleoside transporter			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			2	
base_tigr	base_ec	base_ec	all-same	glutamyl-tRNA synthetase (EC 6.1.1.17)	6.1.1.17		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	transcriptional regulator, LysR family			3	1, 2, 3
base_one miss	0	base_one miss	majority	FIG00638837: hypothetical protein			1	
gs-sh	lit-s	orth	all-same	nucleoside transporter			3	1, 2, 3
base_lit-s	base_ec	lit-s	all-same	xanthosine phosphorylase	2.4.2.-		3	1, 2, 3
lit-s	0	0	majority	Nucleoside-specific channel-forming protein, Tsx.			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	Transcriptional regulator			3	1, 2, 3
base_one HP	base_one HP	0	majority	Putative cytoplasmic protein			1	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_lit-s	base_ec	base_ec	all-same	DNA ligase, NAD-dependent	6.5.1.2		3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	cell division protein ZipA			3	1, 2, 3
gs-sh	0	0	majority	Uncharacterized protein involved in cysteine biosynthesis			3	1, 2
base_ec	base_ec	base_ec	all-same	cysteine synthase (EC 2.5.1.47)	2.5.1.47		3	1, 2, 3
gs-sh	tf_idf	map	all-same	Phosphotransferase System HPr (HPr) Family			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	phosphoenolpyruvate--protein phosphotransferase (EC 2.7.3.9)	2.7.3.9		3	1, 2, 3
gs-sh	orth	base_ec	all-same	PTS system D-glucose-specific IIA component, Glc family (TC 4.A.1.1.1)	2.7.1.69		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	Pyridoxal kinase (EC 2.7.1.35)	2.7.1.35		3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	FIG00638119: hypothetical protein			0	1, 2
0	orth	0	all-same	Molybdate metabolism regulator			2	1, 3
base_lit-s	base_ec	base_ec	all-same	cysteine synthase B	2.5.1.47		3	1, 2, 3
base_both miss	base_one HP	base_one HP	all-hp	hypothetical protein	HP		0	
base_tigr	base_ec	base_ec	all-same	sulfate ABC transporter, ATP-binding protein	3.6.3.25		3	1, 2, 3
base_lit-s	gs-sh	orth	all-same	sulfate ABC transporter, permease protein CysW			3	1, 2, 3
base_lit-s	gs-sh	tf_idf	all-same	sulfate ABC transporter, permease protein CysT			3	1, 2, 3
gs-sh	0	0	majority	sulfate/thiosulfate-binding protein			3	1, 2
gs-sh	0	0	majority	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	transcriptional regulator, RpiR family			3	1, 2, 3
base_tigr	base_lit-s	map	all-same	N-acetylmuramate 6-phosphate etherase	3.3.2.-		3	1, 2, 3
gs-sh	0	0	majority	PTS system N-acetylmuramate-specific IIB component, Glc family (TC 4.A.1.2.7)/PTS system N-acetylmuramate-specific IIC component, Glc family (TC 4.A.1.2.7)			3	1, 2
0	0	base_lit-s	majority	Beta-lactamase class C and other penicillin binding proteins			3	2, 3
base_tigr	0	0	majority	Dyp-type peroxidase family			3	1, 2
base_one HP	base_one HP	0	majority	Predicted outer membrane lipoprotein YfeY			1	
gs-sh	lit-s	0	all-same	Inner membrane protein YfeZ			2	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_ec	base_ec	base_lit-s	all-same	N-acetylmuramoyl-L-alanine amidase	3.5.1.28		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	coproporphyrinogen oxidase (EC 1.3.3.3)	1.3.3.3		3	1, 2, 3
pfam-sh	map	orth	all-same	transcriptional regulator, AraC family			3	1, 2, 3
gs-sh	tf_idf	map	all-same	Carbon dioxide concentrating mechanism/carboxysome shell protein			3	1, 2, 3
gs-sh	tf_idf	tf_idf	all-same	Ethanolamine utilization protein			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Ethanolamine ammonia-lyase light chain (EC 4.3.1.7)	4.3.1.7		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7)	4.3.1.7		3	1, 2, 3
orth	0	0	majority	Integrase			3	1, 2
base_both miss	base_one HP	base_one HP	all-hp	hypothetical protein	HP		0	
lit-s	base_one HP	base_one HP	all-same				0	1, 2
lit-s	base_one HP	base_one HP	all-same	CPZ-55 prophage; predicted protein			1	1, 2
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
lit-s	base_one HP	base_one HP	all-same	AT hook motif.			2	1, 2
base_one HP	0	base_one HP	majority	FIG00640748: hypothetical protein			1	
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
base_one HP	0	base_one HP	majority	FIG00639312: hypothetical protein			1	
0	lit-s	0	majority	Reactivating factor of Adenosylcobalamin-dependent ethanolamine ammonia lyase			3	1, 3
tf_idf	map	orth	all-same	Ethanolamine utilization protein			3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	acetaldehyde reductase EutG	1.1.1.-		3	1, 2, 3
base_tigr	lit-s	lit-s	all-same	ethanolamine utilization protein EutJ family protein			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	Carbon dioxide concentrating mechanism/carboxysome shell protein			3	1, 2
gs-sh	0	0	majority	Carbon dioxide concentrating mechanism/carboxysome shell protein			3	1, 2
base_lit-s	base_ec	tf_idf	all-same	phosphate acetyltransferase			3	1, 2, 3
tf_idf	map	base_ec	all-same	Ethanolamine utilization cobalamin adenosyltransferase	2.5.1.17		3	1, 2, 3
gs-sh	lit-s	tf_idf	all-same	Ethanolamine utilization protein			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	ethanolamine utilization protein, EutP			3	1, 2, 3
gs-sh	tf_idf	tf_idf	all-same	Ethanolamine utilization protein			3	1, 2, 3
base_ec	base_lit-s	base_ec	all-same	allosteric NADP-dependent malic enzyme (EC 1.1.1.40)	1.1.1.40		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	transaldolase (EC 2.2.1.2)	2.2.1.2		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	transketolase, bacterial and yeast	2.2.1.1		3	1, 2, 3
base_one HP	base_one HP	0	majority	Putative exported protein			1	
gs-sh	0	0	majority	nudix-type nucleoside diphosphatase, YffH/AdpP family	3.6.1.-		3	1, 2
base_tigr	0	0	majority	glutamate synthase small subunit family protein, proteobacterial			3	1, 2
gs-sh	map	orth	all-same	Signal transduction histidine kinase, nitrate/nitrite-specific	2.7.13.3		3	1, 2, 3
base_tigr	0	0	majority	The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family			3	1, 2
gs-sh	0	0	majority	transcriptional regulator, Spx/MgsR family			3	1, 2
base_tigr	base_ec	base_ec	all-same	succinyldiaminopimelate desuccinylase (EC 3.5.1.18)	3.5.1.18		3	1, 2, 3
base_one HP	base_one HP	0	majority	Putative inner membrane protein			1	
0	0	orth	majority	Predicted esterase			3	2, 3
base_ec	0	0	majority	tRNA(Met)-cytidine N(4)-acetyltransferase	2.3.1.193		3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	base_ec	base_ec	all-same	phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6)	6.3.2.6		3	1, 2, 3
gs-sh	0	0	majority	Beta-barrel assembly machine subunit BamC			3	1, 2
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
base_tigr	base_ec	base_ec	all-same	dihydrodipicolinate synthase (EC 4.2.1.52)	4.2.1.52		3	1, 2, 3
gs-sh	0	0	majority	Glycine cleavage system regulatory protein			3	1, 2
orth	map	base_ec	all-same	Peroxiredoxin	1.11.1.15		3	1, 2, 3
gs-sh	lit-s	map	all-same	Fe-S-cluster-containing hydrogenase components 2	1.-		3	1, 2, 3
gs-sh	0	0	majority	Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit	1.-		3	1, 2
gs-sh	lit-s	orth	all-same	Formate hydrogenlyase subunit 4	1.-		3	1, 2, 3
0	0	orth	majority	NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit	1.-		3	2, 3
gs-sh	lit-s	map	all-same	Hydrogenase 4 membrane component (E)	1.-		3	1, 2, 3
0	0	orth	majority	Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit	1.-		3	2, 3
gs-sh	lit-s	map	all-same	Ni,Fe-hydrogenase III large subunit	1.-		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	map	orth	all-same	Ni,Fe-hydrogenase III small subunit	1.-		3	1, 2, 3
lit-s	0	0	majority	Formate hydrogenlyase maturation protein HycH.	1.-		3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
tf_idf	tf_idf	tf_idf	all-same	formate/nitrite transporter			3	1, 2, 3
base_one HP	base_one HP	gs-sh	all-same	Predicted permease			2	2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	base_ec	base_ec	all-same	arsenate reductase (glutaredoxin)	1.20.4.1		3	1, 2, 3
base_tigr	gs-sh	pfam-sh	all-same	regulatory inactivation of DnaA Hda protein			3	1, 2, 3
gs-sh	lit-s	map	all-same	uracil-xanthine permease			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	uracil phosphoribosyltransferase (EC 2.4.2.9)	2.4.2.9		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)	6.3.3.1		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)	2.1.2.2		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	polyphosphate kinase 1	2.7.4.1		3	1, 2, 3
base_lit-s	base_ec	base_ec-d	all-same	exopolyphosphatase	3.6.1.11, 3.6.1.40		3	1, 2, 3
gs-sh	map	orth	all-same	diguanylate cyclase/phosphodiesterase			3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	FIG00639493: hypothetical protein			0	1, 2
base_one HP	base_one HP	0	majority	Putative inner membrane protein			1	
0	0	lit-s	majority	Outer membrane lipoprotein			3	2, 3
lit-s	base_one HP	base_one HP	all-same	Putative membrane protein			1	1, 2
base_ec	base_ec-d	base_ec-d	majority	GMP synthase (glutamine-hydrolyzing) (EC 6.3.5.2)	6.3.5.2		3	1, 2
base_tigr	base_ec	base_ec	all-same	inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	1.1.1.205		3	1, 2, 3
base_one HP	base_one HP	gs-sh	all-same	Hypothetical protein yfgJ			1	2, 3
base_tigr	base_ec	base_ec	all-same	Exodeoxyribonuclease VII large subunit (EC 3.1.11.6)	3.1.11.6		3	1, 2, 3
base_lit-s	0	0	majority	ribosome-associated GTPase EngA			3	1, 2
base_tigr	0	0	majority	Beta-barrel assembly machine subunit BamB			3	1, 2
base_one HP	base_one HP	0	majority	Mlr7403 protein			1	
base_tigr	base_ec	base_ec	all-same	histidyl-tRNA synthetase (EC 6.1.1.21)	6.1.1.21		3	1, 2, 3
base_lit-s	base_ec	base_ec-d	all-same	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	1.17.7.1,1.17.4.3		3	1, 2, 3
gs-sh	0	0	all-same	FIG021952: putative membrane protein			2	1, 2
base_tigr	gs-sh	map	all-same	23S rRNA m(2)A-2503 methyltransferase (EC 2.1.1.192)	2.1.1.192		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	nucleoside diphosphate kinase (EC 2.7.4.6)	2.7.4.6		3	1, 2, 3
base_lit-s	0	0	majority	penicillin-binding protein 1C	2.4.1.-		3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
lit-s	lit-s	lit-s	all-same	SseB protein.			3	1, 2, 3
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_ec	base_ec	base_ec	all-same	aminopeptidase B. Metallo peptidase. MEROPS family M17	3.4.11.23		3	1, 2, 3
base_tigr	0	0	majority	FeS assembly protein IscX			3	1, 2
base_lit-s	gs-sh	tf_idf	all-same	ferredoxin, 2Fe-2S type, ISC system			3	1, 2, 3
base_tigr	map	base_lit-s	all-same	Chaperone protein HscA			3	1, 2, 3
base_tigr	0	0	majority	Co-chaperone protein HscB			3	1, 2
gs-sh	0	0	majority	Iron-binding apoprotein IscA			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	FeS assembly scaffold apoprotein IscU			3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	cysteine desulfurase IscS	2.8.1.7		3	1, 2, 3
gs-sh	0	0	majority	transcriptional regulator, BadM/Rrf2 family			3	1, 2
base_ec	gs-sh	map	all-same	RNA methyltransferase, TrmH family, group 1	2.1.1.200		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family	3.1.3.25		3	1, 2, 3
0	0	gs-sh	majority	Hydrolases of the alpha/beta superfamily			3	2, 3
base_tigr	0	0	majority	phenyl proprionate permease family protein			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	Transcriptional regulator			3	1, 2
base_ec-d	base_ec-d	base_ec	majority	phenylpropionate dioxygenase alpha subunit (EC 1.14.12.19)	1.14.12.19		3	2, 3
0	0	base_ec	majority	phenylpropionate dioxygenase beta subunit (EC 1.14.12.19)	1.14.12.19		3	2, 3
gs-sh	0	0	majority	phenylpropionate dioxygenase ferredoxin subunit	1.14.12.19		3	1, 2
gs-sh	map	orth	all-same	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase	1.3.1.87,1.3.1.-		3	1, 2, 3
0	0	base_ec	majority	phenylpropionate dioxygenase ferredoxin reductase subunit (EC 1.18.1.3)	1.18.1.3		3	2, 3
gs-sh	lit-s	map	all-same	Predicted membrane protein			3	1, 2, 3
gs-sh	tf_idf	map	all-same	Galactose mutarotase and related enzymes			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_ec-d	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
0	orth	0	majority	Transcriptional regulator/sugar kinase			3	1, 3
base_ec	base_ec	base_ec	all-same	serine hydroxymethyltransferase (EC 2.1.2.1)	2.1.2.1		3	1, 2, 3
0	0	base_ec	majority	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	1.14.12.17		3	2, 3
gs-sh	orth	lit-s	all-same	nitrogen regulatory protein P-II family			3	1, 2, 3
pfam-sh	0	0	majority	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains			3	1, 2
gs-sh	0	0	majority	YfhG lipoprotein.			3	1, 2
gs-sh	lit-s	map	all-same	Signal transduction histidine kinase	2.7.13.3		3	1, 2, 3
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_tigr	base_ec-d	base_ec-d	majority	phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)	6.3.5.3		3	1, 2
gs-sh	gs-sh	gs-sh	all-same	tRNA-adenosine deaminase (EC 3.5.4.-)	3.5.4.-		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	gs-sh	gs-sh	all-same	transcriptional regulator, RpiR family			3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_lit-s	base_ec	base_ec	all-same	holo-[acyl-carrier-protein] synthase	2.7.8.7		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	pyridoxine 5'-phosphate synthase (EC 2.6.99.2)	2.6.99.2		3	1, 2, 3
base_tigr	pfam-sh	pfam-sh	all-same	DNA replication and repair protein RecO			3	1, 2, 3
base_lit-s	base_lit-s	base_lit-s	all-same	GTP-binding protein Era			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	RNAse III (EC 3.1.26.3)	3.1.26.3		3	1, 2, 3
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_tigr	base_ec	base_ec	all-same	signal peptidase I (EC:3.4.21.89). Serine peptidase. MEROPS family S26A	3.4.21.89		3	1, 2, 3
base_lit-s	pfam-sh	pfam-sh	all-same	GTP-binding protein LepA			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	positive regulator of sigma(E), RseC/MucC			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	sigma E regulatory protein, MucB/RseB			3	1, 2, 3
gs-sh	gs-sh	pfam-sh	all-same	anti sigma-E protein, RseA			3	1, 2, 3
gs-sh	base_lit-s	gs-sh	all-same	RNA polymerase, sigma-24 subunit, RpoE			3	1, 2, 3
0	0	gs-sh	majority	Predicted O-methyltransferase			3	2, 3
base_tigr	base_lit-s	base_ec	all-same	L-aspartate oxidase (EC 1.4.3.16)	1.4.3.16		3	1, 2, 3
gs-sh	base_lit-s	gs-sh	all-same	Superfamily II DNA and RNA helicases	2.7.7.-		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Transcriptional regulator			3	1, 2, 3
gs-sh	orth	orth	all-same	Putative threonine efflux protein			3	1, 2, 3
gs-sh	0	0	majority	Acid-induced glycyl radical enzyme			3	1, 2
base_tigr	gs-sh	tf_idf	all-same	Uracil-DNA glycosylase	3.2.2.27,3.2.2.-		3	1, 2, 3
0	0	gs-sh	majority	rRNA methylases	2.1.1.-		3	2, 3
base_lit-s	orth	base_ec	all-same	thioredoxin	1.8.1.8		3	1, 2, 3
0	0	lit-s	all-same	FIG00637884: hypothetical protein			1	2, 3
0	lit-s	0	majority	Acyl-CoA synthetase (NDP forming)			3	1, 3
base_ec	base_lit-s	base_ec	all-same	Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes	2.7.8.8		3	1, 2, 3
gs-sh	lit-s	map	all-same	metabolite-proton symporter			3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_tigr	gs-sh	map	all-same	ATP-dependent chaperone ClpB			3	1, 2, 3
base_one HP	base_one HP	0	majority	uncharacterized protein, YfiH family			1	
base_lit-s	base_ec-d	lit-s	all-same	ribosomal large subunit pseudouridine synthase D	5.4.99.23,5.4.99.-		3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	0	0	majority	SSU ribosomal protein S30P/sigma 54 modulation protein			3	1, 2
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
base_tigr	base_ec	base_ec	all-same	3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54)	2.5.1.54		3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00638228: hypothetical protein			0	2, 3
base_one HP	base_one HP	0	majority	Uncharacterized protein YfiR precursor			1	
0	0	orth	majority	diguanylate cyclase (GGDEF) domain			3	2, 3
gs-sh	0	0	majority	Outer membrane protein and related peptidoglycan-associated (lipo)proteins			3	1, 2
base_tigr	map	lit-s	all-same	LSU ribosomal protein L19P			3	1, 2, 3
base_tigr	gs-sh	base_ec	all-same	tRNA (Guanine37-N(1)-) methyltransferase	2.1.1.31		3	1, 2, 3
base_lit-s	base_lit-s	base_lit-s	all-same	16S rRNA processing protein RimM			3	1, 2, 3
base_tigr	map	lit-s	all-same	SSU ribosomal protein S16P			3	1, 2, 3
base_tigr	tf_idf	pfam-sh	all-same	signal recognition particle subunit FFH/SRP54 (srp54)			3	1, 2, 3
gs-sh	0	0	majority	ABC-type uncharacterized transport system, permease component			3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	gs-sh	pfam-sh	all-same	Molecular chaperone GrpE (heat shock protein)			3	1, 2, 3
0	0	base_ec	majority	Predicted sugar kinase	2.7.1.23		3	2, 3
base_tigr	base_lit-s	gs-sh	all-same	DNA replication and repair protein RecN			3	1, 2, 3
gs-sh	0	0	majority	Beta-barrel assembly machine subunit BamE			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	UPF0125 protein yfjF			2	1, 2, 3
gs-sh	0	0	majority	Oligoketide cyclase/lipid transport protein			3	1, 2
base_tigr	gs-sh	gs-sh	all-same	SsrA-binding protein			3	1, 2, 3
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
gs-sh	0	0	majority	Integrase			3	1, 2
lit-s	base_one HP	base_one HP	all-same	putative histone			1	1, 2
base_one miss	base_both miss	base_one miss	majority	transcriptional regulator, AlpA family			1	
base_one HP	base_one HP	0	majority	Hyphotheical protein			1	
base_one miss	base_both miss	base_one miss	all-hp	hypothetical protein	HP		0	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	majority	Domain of unknown function (DUF4297)./Domain of unknown function (DUF1837).			1	
lit-s	base_one HP	base_one HP	all-same	putative cell division protein			1	1, 2
base_one HP	base_one HP	base_lit-s	all-same	hypothetical protein			1	2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	lit-s	all-same	FIG01224161: hypothetical protein			0	2, 3
gs-sh	0	0	all-same	Predicted transcriptional regulator			2	1, 2
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
lit-s	base_one HP	base_one HP	all-same	FIG00642476: hypothetical protein			0	1, 2
lit-s	base_one HP	base_one HP	all-same	Intergenic-region protein			1	1, 2
gs-sh	gs-sh	base_ec	all-same	Arsenate reductase and related proteins, glutaredoxin family	1.20.4.1		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	0	base_one HP	majority	FIG00638879: hypothetical protein			1	
0	0	gs-sh	majority	Antirestriction protein.			3	2, 3
base_one HP	base_one HP	lit-s	all-same	DNA repair protein radc			2	2, 3
base_one miss	base_both miss	base_one miss	all-hp	hypothetical protein	HP		0	
0	0	0	man-rest	MANUAL-REST			3	
0	lit-s	0	all-same	YpjF toxin protein			2	1, 3
base_tigr	0	0	majority	outer membrane autotransporter barrel domain			3	1, 2
lit-s	lit-s	base_lit-s	all-same	hypothetical protein			0	1, 2, 3
lit-s	lit-s	base_lit-s	all-same	hypothetical protein			0	1, 2, 3
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
0	0	0	man-rest	MANUAL-REST			3	
tf_idf	0	0	majority	Alpha amylase, catalytic domain.			3	1, 2
base_one miss	0	base_one miss	man-rest	MANUAL-REST			2	
lit-s	pfam-sh	map	all-same	CsiD.			3	1, 2, 3
gs-sh	base_ec	map	all-same	Predicted dehydrogenase	1.1.3.-		3	1, 2, 3
base_ec-d	base_ec-d	base_ec	majority	succinate-semialdehyde dehydrogenase	1.2.1.16		3	2, 3
base_tigr	base_ec	base_ec	all-same	4-aminobutyrate aminotransferase apoenzyme	2.6.1.19		3	1, 2, 3
base_tigr	tf_idf	map	all-same	gamma-aminobutyrate:proton symporter, AAT family (TC 2.A.3.1.4)			3	1, 2, 3
gs-sh	0	0	majority	transcriptional regulator, GntR family			3	1, 2
base_one HP	base_one HP	0	majority	BON domain./LysM domain.			1	
0	0	0	man-rest	MANUAL-REST			2	
gs-sh	gs-sh	lit-s	all-same	transcriptional regulator, ArsR family			3	1, 2, 3
gs-sh	orth	map	all-same	Rhodanese-related sulfurtransferase			3	1, 2, 3
gs-sh	base_lit-s	gs-sh	all-same	nucleoid protein StpA			3	1, 2, 3
base_one HP	base_one HP	0	majority	Putative inner membrane protein			1	
base_one HP	base_one HP	lit-s	all-same	FIG01219827: hypothetical protein			0	2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00638140: hypothetical protein			0	2, 3
gs-sh	0	0	majority	ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit	1.17.4.1		3	1, 2
base_tigr	0	0	majority	ribonucleoside-diphosphate reductase 2, operon protein nrdI			3	1, 2
base_ec	base_ec	base_ec	all-same	ribonucleoside-diphosphate reductase class Ib alpha subunit (EC 1.17.4.1)	1.17.4.1		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	ribonucleoside-diphosphate reductase class Ib beta subunit (EC 1.17.4.1)	1.17.4.1		3	1, 2, 3
base_lit-s	0	0	majority	glycine betaine/L-proline transport ATP binding subunit	3.6.3.32		3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	ABC-type proline/glycine betaine transport systems, periplasmic components			3	1, 2
lit-s	base_one HP	base_one HP	all-same	MFS permease protein			1	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	all-same	Predicted branched-chain amino acid permease (azaleucine resistance)			2	1, 2
gs-sh	gs-sh	lit-s	all-same	Branched-chain amino acid transport protein (AzlD).			3	1, 2, 3
gs-sh	0	0	majority	Transcriptional regulators			3	1, 2
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
base_tigr	map	tf_idf	all-same	efflux pump membrane protein (multidrug resistance protein A)			3	1, 2, 3
gs-sh	lit-s	map	all-same	drug resistance transporter, EmrB/QacA subfamily			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	S-ribosylhomocysteine lyase (EC 4.4.1.21)/quorum-sensing autoinducer 2 (AI-2) synthesis protein LuxS	4.4.1.21		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	glutamate-cysteine ligase (EC 6.3.2.2)	6.3.2.2		3	1, 2, 3
gs-sh	orth	lit-s	all-same	Predicted membrane protein			3	1, 2, 3
gs-sh	lit-s	map	all-same	haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/beta-phosphoglucomutase family hydrolase			3	1, 2, 3
base_tigr	lit-s	gs-sh	all-same	carbon storage regulator, CsrA			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	alanyl-tRNA synthetase (EC 6.1.1.7)	6.1.1.7		3	1, 2, 3
gs-sh	lit-s	0	all-same	Regulatory protein RecX			2	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	protein RecA			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	competence/damage-inducible protein CinA C-terminal domain			3	1, 2, 3
base_lit-s	gs-sh	tf_idf	all-same	lytic murein transglycosylase B	3.2.1.-		3	1, 2, 3
gs-sh	0	0	majority	PTS system D-sorbitol-specific IIC component, Gut family (TC 4.A.4.1.1)			3	1, 2
gs-sh	base_ec	map	all-same	PTS system D-sorbitol-specific IIB component, Gut family (TC 4.A.4.1.1)/PTS system D-sorbitol-specific IIC component, Gut family (TC 4.A.4.1.1)			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	PTS system D-sorbitol-specific IIA component, Gut family (TC 4.A.4.1.1)	2.7.1.69		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	1.1.1.140		3	1, 2, 3
lit-s	lit-s	lit-s	all-same	Glucitol operon activator			3	1, 2, 3
gs-sh	map	orth	all-same	transcriptional regulator, DeoR family			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	gs-sh	gs-sh	all-same	KpsF/GutQ family protein			3	1, 2, 3
gs-sh	lit-s	map	all-same	Uncharacterized flavoproteins			3	1, 2, 3
gs-sh	lit-s	map	all-same	NAD(P)H-nitrite reductase	1.18.1.-		3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	Hydrogenase maturation protein, carbamoyltransferase HypF			3	1, 2, 3
gs-sh	map	base_lit-s	all-same	Fe-S-cluster-containing hydrogenase components 2			3	1, 2, 3
base_one miss	lit-s	base_one miss	all-same	FIG00638215: hypothetical protein			0	1, 3
pfam-sh	map	orth	all-same	transcriptional regulator, LacI family			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	base_ec	majority	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	3.2.1.86		3	2, 3
gs-sh	0	0	majority	Hydrogenase 3 maturation peptidase Hycl. Aspartic peptidase. MEROPS family A31	3.4.23.51		3	1, 2
lit-s	lit-s	lit-s	all-same	Formate hydrogenlyase maturation protein HycH.			3	1, 2, 3
gs-sh	lit-s	map	all-same	[NiFe]-hydrogenase III apoprotein, small subunit			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	gs-sh	base_lit-s	all-same	Formate hydrogenlyase subunit 4			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	Fe-S-cluster-containing hydrogenase components 2			3	1, 2
gs-sh	lit-s	map	all-same	Transcriptional repressor of hyc and hyp operons.			3	1, 2, 3
base_tigr	pfam-sh	pfam-sh	all-same	Hydrogenase-3 nickel incorporation protein HypA			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	Hydrogenase nickel incorporation protein HypB			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	Hydrogenase maturation protein HypC			3	1, 2, 3
base_tigr	pfam-sh	pfam-sh	all-same	Hydrogenase maturation protein HypD			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	Hydrogenase maturation protein, carbamoyl dehydratase HypE			3	1, 2, 3
gs-sh	lit-s	map	all-same	Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains			3	1, 2, 3
lit-s	0	0	all-same	Nitrous oxide-stimulated promoter.			2	1, 2
base_lit-s	base_lit-s	base_lit-s	all-same	DNA mismatch repair protein MutS			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Calcineurin-like phosphoesterase.	3.1.3.16		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	transcriptional regulator, DeoR family			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	lit-s	all-same	FIG00641944: hypothetical protein			0	2, 3
0	0	base_lit-s	majority	Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases			3	2, 3
0	0	base_lit-s	majority	Hydroxypyruvate isomerase			3	2, 3
gs-sh	orth	orth	all-same	gluconate transporter			3	1, 2, 3
gs-sh	base_lit-s	map	all-same	RNA polymerase, sigma 38 subunit, RpoS			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Membrane proteins related to metalloendopeptidases			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	protein-L-isoaspartate(D-aspartate) O-methyltransferase	2.1.1.77		3	1, 2, 3
base_tigr	base_ec-d	base_ec-d	majority	5'-nucleotidase/3'-nucleotidase/exopolyphosphatase	3.1.3.5,3.1.3.5, 3.1.3.6, 3.6.1.11		3	1, 2
base_ec	gs-sh	gs-sh	all-same	tRNA pseudouridine synthase, TruD family	5.4.99.27		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)	4.6.1.12		3	1, 2, 3
base_lit-s	base_lit-s	base_lit-s	all-same	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2.7.7.60		3	1, 2, 3
lit-s	gs-sh	gs-sh	all-same	cell division protein FtsB			3	1, 2, 3
gs-sh	orth	0	all-same	Putative cytochrome oxidase subunit			2	1, 2, 3
base_ec	base_ec	base_ec	all-same	adenylylsulfate kinase (EC 2.7.1.25)	2.7.1.25		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	sulfate adenylyltransferase subunit 1	2.7.7.4		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)	2.7.7.4		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
base_tigr	gs-sh	lit-s	all-same	CRISPR-associated protein, Cas2 family			3	1, 2, 3
gs-sh	gs-sh	lit-s	all-same	CRISPR-associated protein, Cas1 family			3	1, 2, 3
base_tigr	map	lit-s	all-same	CRISPR-associated protein, Cse3 family			3	1, 2, 3
base_one miss	base_both miss	base_one miss	majority	CRISPR-associated protein, Cas5e family			1	
base_tigr	map	lit-s	all-same	CRISPR-associated protein, Cse4 family			3	1, 2, 3
base_tigr	map	lit-s	all-same	CRISPR-associated protein, Cse2 family			3	1, 2, 3
base_tigr	pfam-sh	lit-s	all-same	CRISPR-associated protein, Cse1 family			3	1, 2, 3
0	0	lit-s	majority	CRISPR-associated helicase, Cas3 family			3	2, 3
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_ec	base_ec	base_ec	all-same	phosphoadenylylsulfate reductase (thioredoxin) (EC 1.8.4.8)	1.8.4.8		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	sulfite reductase (NADPH) beta subunit (EC 1.8.1.2)	1.8.1.2		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	sulfite reductase (NADPH) alpha subunit (EC 1.8.1.2)	1.8.1.2		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	preQ(0) biosynthesis protein QueD	4.2.3.12		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	tf_idf	majority	electron transfer flavoprotein alpha subunit apoprotein			3	2, 3
0	0	tf_idf	majority	electron transfer flavoprotein beta subunit			3	2, 3
gs-sh	lit-s	map	all-same	Arabinose efflux permease			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	lit-s	map	all-same	Nitrate/nitrite transporter			3	1, 2, 3
gs-sh	orth	map	all-same	Sugar (pentulose and hexulose) kinases			3	1, 2, 3
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
base_one HP	base_one HP	gs-sh	all-same	Organic radical activating enzymes			2	2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	base_ec	base_ec	all-same	enolase (EC 4.2.1.11)	4.2.1.11		3	1, 2, 3
base_tigr	base_lit-s	base_ec	all-same	CTP synthase (EC 6.3.4.2)	6.3.4.2		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	MazG family protein	3.6.1.8		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Growth inhibitor	3.1.-		3	1, 2, 3
gs-sh	0	0	majority	Growth regulator			3	1, 2
base_ec	0	0	majority	(p)ppGpp synthetase, RelA/SpoT family	2.7.6.5		3	1, 2
base_tigr	lit-s	gs-sh	all-same	23S rRNA m(5)U-1939 methyltransferase (EC 2.1.1.190)	2.1.1.190		3	1, 2, 3
base_ec	0	0	majority	Hpt sensor hybrid histidine kinase (EC 2.7.13.3)	2.7.13.3		3	1, 2
base_tigr	base_ec	base_ec	all-same	D-glucarate dehydratase (EC 4.2.1.40)	4.2.1.40		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	orth	majority	D-galactonate transporter			3	2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	base_lit-s	majority	tRNA pseudouridine synthase C	5.4.99.26,5.4.99.-		3	2, 3
base_one HP	base_one HP	0	majority	Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C)			1	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
gs-sh	lit-s	map	all-same	Syd protein (SUKH-2).			3	1, 2, 3
base_tigr	gs-sh	tf_idf	all-same	7-cyano-7-deazaguanine reductase	1.7.1.13		3	1, 2, 3
0	0	orth	majority	Predicted Rossmann fold nucleotide-binding protein			3	2, 3
base_lit-s	lit-s	lit-s	all-same	serine transporter			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	L-serine dehydratase, iron-sulfur-dependent, single chain form	4.3.1.17		3	1, 2, 3
gs-sh	0	0	majority	5'-3' exonuclease (including N-terminal domain of PolI)			3	1, 2
base_lit-s	base_ec	base_ec	all-same	lactaldehyde reductase	1.1.1.77		3	1, 2, 3
base_ec	base_lit-s	base_ec	all-same	L-fuculose 1-phosphate aldolase (EC 4.1.2.17)	4.1.2.17		3	1, 2, 3
base_tigr	gs-sh	orth	all-same	L-fucose:H+ symporter permease			3	1, 2, 3
base_tigr	base_lit-s	base_ec	all-same	L-fucose isomerase (EC 5.3.1.25)	5.3.1.25		3	1, 2, 3
base_tigr	base_lit-s	base_ec	all-same	L-fuculokinase (EC 2.7.1.51)	2.7.1.51		3	1, 2, 3
gs-sh	base_lit-s	orth	all-same	Fucose dissimilation pathway protein FucU	5.1.3.-		3	1, 2, 3
gs-sh	map	orth	all-same	transcriptional regulator, DeoR family			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Predicted SAM-dependent methyltransferase	2.1.1.186		3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	gs-sh	map	all-same	Transcriptional regulator			3	1, 2, 3
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_one HP	base_one HP	0	majority	probable lipoprotein			1	
base_lit-s	base_ec	map	all-same	cysteine desulfurase, catalytic subunit CsdA	4.4.1.-		3	1, 2, 3
base_lit-s	0	0	majority	cysteine desulfurase, sulfur acceptor subunit CsdE			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1			3	1, 2, 3
gs-sh	gs-sh	tf_idf	all-same	Membrane-bound lytic murein transglycosylase	3.2.1.-		3	1, 2, 3
base_ec	base_ec	base_lit-s	all-same	N-acetylmuramoyl-L-alanine amidase	3.5.1.28		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	N-acetylglutamate synthase (EC 2.3.1.1)	2.3.1.1		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	DNA helicase/exodeoxyribonuclease V, alpha subunit (EC 3.1.11.5)	3.1.11.5		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	DNA helicase/exodeoxyribonuclease V, beta subunit (EC 3.1.11.5)	3.1.11.5		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	pitrilysin (EC:3.4.24.55). Metallo peptidase. MEROPS family M16A	3.4.24.55		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	DNA helicase/exodeoxyribonuclease V, gamma subunit (EC 3.1.11.5)	3.1.11.5		3	1, 2, 3
base_tigr	0	0	majority	prepilin-type N-terminal cleavage/methylation domain			3	1, 2
base_one HP	base_one HP	lit-s	all-same	FIG006270: hypothetical protein			0	2, 3
base_tigr	0	0	majority	prepilin-type N-terminal cleavage/methylation domain			3	1, 2
base_tigr	orth	map	all-same	prepilin-type N-terminal cleavage/methylation domain			3	1, 2, 3
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
base_tigr	base_ec	base_ec	all-same	thymidylate synthase (EC 2.1.1.45)	2.1.1.45		3	1, 2, 3
base_tigr	lit-s	base_lit-s	all-same	Prolipoprotein diacylglyceryl transferase	2.-		3	1, 2, 3
base_lit-s	0	0	majority	phosphoenolpyruvate-protein phosphotransferase	2.7.3.9		3	1, 2
gs-sh	0	0	majority	NTP pyrophosphohydrolases including oxidative damage repair enzymes	3.6.1.-		3	1, 2
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
base_tigr	base_lit-s	pfam-sh	all-same	DNA mismatch repair protein MutH			3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	gs-sh	all-same	Hypothetical lipoprotein ygdR precursor			1	2, 3
gs-sh	0	0	majority	Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)			3	1, 2
gs-sh	lit-s	map	all-same	Major Facilitator Superfamily.			3	1, 2, 3
base_ec-d	base_ec-d	base_ec	majority	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	2.3.1.40, 6.2.1.20		3	2, 3
gs-sh	gs-sh	pfam-sh	all-same	transcriptional regulator, LacI family			3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	diaminopimelate decarboxylase	4.1.1.20		3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	lit-s	gs-sh	all-same	Transcriptional regulator			3	1, 2, 3
gs-sh	0	0	majority	MFS transporter, sugar porter (SP) family			3	1, 2
base_tigr	base_lit-s	base_ec	all-same	2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)	1.1.1.125		3	1, 2, 3
base_ec	base_lit-s	base_ec	all-same	4-deoxy-L-threo-5-hexulose uronate isomerase	5.3.1.17		3	1, 2, 3
base_tigr	map	base_ec	all-same	acetyl-CoA acetyltransferase (EC 2.3.1.9)	2.3.1.9		3	1, 2, 3
gs-sh	orth	map	all-same	Amino acid permeases			3	1, 2, 3
gs-sh	0	0	majority	DNA-binding HTH domain-containing proteins			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	0	base_one HP	majority	YqeJ protein			1	
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
lit-s	0	0	majority	Tetratricopeptide repeat.			3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
lit-s	base_one HP	base_one HP	all-same				0	1, 2
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
0	base_one miss	base_one miss	man-rest	MANUAL-REST			2	
base_one miss	base_both miss	base_one miss	majority	two component transcriptional regulator, LuxR family			1	
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
lit-s	base_one HP	base_one HP	all-same	Putative uncharacterized protein ygeN			1	1, 2
lit-s	base_one HP	base_one HP	all-same	FIG00638587: hypothetical protein			0	1, 2
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
gs-sh	0	0	majority	Membrane proteins related to metalloendopeptidases			3	1, 2
0	0	base_ec	majority	Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs	1.17.1.4		3	2, 3
0	0	base_ec	majority	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs	1.17.1.4		3	2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_ec	base_ec	base_ec	all-same	diaminopropionate ammonia-lyase (EC 4.3.1.15)	4.3.1.15		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	0	0	majority	dihydropyrimidinase (EC 3.5.2.2)	3.5.2.2		3	1, 2
base_lit-s	orth	orth	all-same	carbamate kinase	2.7.2.2		3	1, 2, 3
base_one HP	base_one HP	gs-sh	all-same	predicted molybdenum cofactor sulfurylase			2	2, 3
base_tigr	0	0	majority	probable selenium-dependent hydroxylase accessory protein YqeC			3	1, 2
base_tigr	0	0	majority	molybdenum cofactor cytidylyltransferase	2.7.7.76		3	1, 2
base_tigr	0	0	majority	selenate reductase, Fe-S subunit	1.97.1.9		3	1, 2
gs-sh	lit-s	gs-sh	all-same	putative selenium metabolism protein SsnA			3	1, 2, 3
0	0	orth	majority	selenate reductase, FAD-binding subunit			3	2, 3
0	0	0	man-rest	MANUAL-REST			3	
lit-s	map	orth	all-same	uracil-xanthine permease			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	guanine deaminase (EC 3.5.4.3)	3.5.4.3		3	1, 2, 3
gs-sh	0	0	majority	Permeases			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	0	0	majority	glutamate synthase small subunit family protein, proteobacterial			3	1, 2
gs-sh	gs-sh	orth	all-same	xanthine permease			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2)	5.3.3.2		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	lysyl-tRNA synthetase, class II (EC 6.1.1.6)	6.1.1.6		3	1, 2, 3
base_tigr	0	0	majority	bacterial peptide chain release factor 2 (bRF-2)			3	1, 2
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
base_lit-s	lit-s	lit-s	all-same	single-stranded-DNA-specific exonuclease RecJ	3.1.-		3	1, 2, 3
0	0	base_lit-s	majority	Thiol:disulfide interchange protein DsbC	5.3.4.1		3	2, 3
base_lit-s	lit-s	lit-s	all-same	tyrosine recombinase XerD			3	1, 2, 3
base_tigr	orth	map	all-same	flavodoxin, long chain			3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00622612: hypothetical protein			0	2, 3
base_one HP	base_one HP	0	majority	YgfY COG2938			1	
gs-sh	0	0	majority	folate-binding protein YgfZ			3	1, 2
base_one HP	base_one HP	tf_idf	all-same	channel protein, hemolysin III family			2	2, 3
base_one HP	base_one HP	0	majority	Protein HI1394			1	
0	0	base_ec	majority	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	3.2.1.86		3	2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_tigr	base_ec	base_ec-d	all-same	glycine dehydrogenase (decarboxylating) alpha subunit/glycine dehydrogenase (decarboxylating) beta subunit	1.4.4.2,1.4.4.2, 1.4.4.2		3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	glycine cleavage system H protein			3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	glycine cleavage system T protein	2.1.2.10		3	1, 2, 3
base_tigr	map	lit-s	all-same	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	1.14.13.-		3	1, 2, 3
gs-sh	gs-sh	tf_idf	all-same	2-octaprenyl-6-methoxyphenol hydroxylase/2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	1.14.13.-,1.14.13.-, 1.14.13.-		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	aminopeptidase P (EC:3.4.11.9). Metallo peptidase. MEROPS family M24B	3.4.11.9		3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
lit-s	pfam-sh	pfam-sh	all-same	cell division protein ZapA			3	1, 2, 3
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_tigr	base_lit-s	base_ec	all-same	5,10-methenyltetrahydrofolate synthetase	6.3.3.2		3	1, 2, 3
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_ec	base_lit-s	base_ec	all-same	D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	1.1.1.95		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	ribose-5-phosphate isomerase (EC 5.3.1.6)	5.3.1.6		3	1, 2, 3
lit-s	0	0	all-same	LysR substrate binding domain.			2	1, 2
gs-sh	lit-s	map	all-same	transcriptional regulator, ArgP family			3	1, 2, 3
tf_idf	lit-s	base_ec	all-same	methylmalonyl-CoA mutase C-terminal domain/methylmalonyl-CoA mutase N-terminal domain	5.4.99.2		3	1, 2, 3
base_lit-s	orth	gs-sh	all-same	LAO/AO transport system ATPase	2.7.-		3	1, 2, 3
map	orth	base_ec	all-same	methylmalonyl-CoA decarboxylase, homohexamer (EC 4.1.1.41)	4.1.1.41		3	1, 2, 3
gs-sh	gs-sh	lit-s	all-same	Transcriptional regulator			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	lit-s	all-same	Protein of unknown function DUF541			0	2, 3
gs-sh	orth	map	all-same	L-lysine exporter			3	1, 2, 3
lit-s	gs-sh	gs-sh	all-same	Small-conductance mechanosensitive channel			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	fructose-bisphosphate aldolase (EC 4.1.2.13)	4.1.2.13		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	phosphoglycerate kinase (EC 2.7.2.3)	2.7.2.3		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	erythrose 4-phosphate dehydrogenase (EC 1.2.1.72)	1.2.1.72		3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
lit-s	lit-s	lit-s	all-same	Transcriptional regulator			3	1, 2, 3
base_lit-s	base_ec	map	all-same	fructose-1,6-bisphosphatase, class II			3	1, 2, 3
0	0	gs-sh	majority	Threonine dehydrogenase and related Zn-dependent dehydrogenases			3	2, 3
gs-sh	0	0	majority	PTS system D-mannitol-specific IIB component, Fru family (TC 4.A.2.1.5)/PTS system D-mannitol-specific IIC component, Fru family (TC 4.A.2.1.5)			3	1, 2
gs-sh	orth	map	all-same	PTS system IIA component, Fru family (TC 4.A.2)			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	transketolase (EC 2.2.1.1)	2.2.1.1		3	1, 2, 3
base_one HP	base_one HP	gs-sh	all-same	Zn-dependent protease with chaperone function	3.4.24.-		2	2, 3
base_tigr	base_ec	base_ec	all-same	agmatinase (EC 3.5.3.11)	3.5.3.11		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	arginine decarboxylase (EC 4.1.1.19)	4.1.1.19		3	1, 2, 3
base_one miss	base_both miss	base_one miss	all-hp	hypothetical protein	HP		0	
base_tigr	base_ec	base_ec	all-same	methionine adenosyltransferase (EC 2.5.1.6)	2.5.1.6		3	1, 2, 3
gs-sh	0	0	majority	MFS transporter, sugar porter (SP) family			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	Protein sprT			2	1, 2, 3
base_ec	0	0	majority	Endonuclease I	3.1.21.1		3	1, 2
base_ec	lit-s	map	all-same	16S rRNA m(3)U-1498 methyltransferase (EC 2.1.1.193)	2.1.1.193		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	glutathione synthase (EC 6.3.2.3)	6.3.2.3		3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	tf_idf	0	majority	RNAse H-fold protein YqgF	3.1.-		3	1, 3
base_one HP	base_one HP	gs-sh	all-same	pilus retraction protein PilT			2	2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
orth	0	0	majority	Predicted integral membrane protein			3	1, 2
base_one HP	base_one HP	0	majority	UPF0235 protein VC0458			1	
base_lit-s	0	base_ec-d	majority	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	3.6.1.19		3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	majority	Putative alpha helix chain			1	
base_ec	base_ec	base_ec	all-same	L-asparaginases, type II	3.5.1.1		3	1, 2, 3
base_one HP	base_one HP	0	majority	FIG004016: Uncharacterized protein YggN			1	
base_one HP	base_one HP	0	majority	FIG002060: uncharacterized protein YggL			1	
base_tigr	base_ec	base_ec	all-same	tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)	2.1.1.33		3	1, 2, 3
base_tigr	base_lit-s	map	all-same	A/G-specific DNA-adenine glycosylase (EC 3.2.2.-)	3.2.2.-		3	1, 2, 3
map	tf_idf	gs-sh	all-same	Fe-S cluster protector protein			3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	lit-s	orth	all-same	nucleoside transporter			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Arginine/lysine/ornithine decarboxylases	4.1.1.17		3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	orth	majority	Type II secretory pathway, component PulM			3	2, 3
base_tigr	tf_idf	map	all-same	type II secretion system protein L (GspL)			3	1, 2, 3
base_tigr	orth	tf_idf	all-same	type II secretion system protein C (GspC)			3	1, 2, 3
base_one HP	gs-sh	base_one HP	all-same	Hypothetical lipoprotein yghG precursor			2	1, 3
gs-sh	0	0	majority	Type II secretory pathway, prepilin signal peptidase PulO and related peptidases	2.1.1.-, 3.4.23.43		3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
gs-sh	gs-sh	orth	all-same	L-lactate transport			3	1, 2, 3
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_tigr	base_ec	base_ec	all-same	malate synthase (EC 2.3.3.9)	2.3.3.9		3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_lit-s	gs-sh	base_ec-d	all-same	glycolate oxidase, subunit GlcD	1.1.3.15		3	1, 2, 3
gs-sh	0	0	majority	transcriptional regulator, GntR family			3	1, 2
base_one HP	0	base_one HP	majority	FIG010505: hypothetical protein			1	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	Membrane protein involved in the export of O-antigen and teichoic acid			3	1, 2
lit-s	0	0	majority	Thymidylate kinase			3	1, 2
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	gs-sh	map	all-same	Phosphate/sulphate permeases			3	1, 2, 3
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
lit-s	gs-sh	gs-sh	all-same	Glutathione S-transferase			3	1, 2, 3
base_tigr	0	0	majority	Hydrogenase 2 accessory protein HybG			3	1, 2
base_lit-s	gs-sh	gs-sh	all-same	hydrogenase nickel insertion protein HypA			3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	Tat proofreading chaperone HybE			3	1, 2, 3
gs-sh	gs-sh	map	all-same	Hydrogenase 2 maturation peptidase. Aspartic peptidase. MEROPS family A31	3.4.24.-		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	[NiFe]-hydrogenase II apoprotein, large subunit	1.12.99.6		3	1, 2, 3
gs-sh	0	0	majority	[NiFe]-hydrogenase II apocytochrome b subunit			3	1, 2
base_tigr	map	gs-sh	all-same	[NiFe]-hydrogenase II apoprotein, ferredoxin-type subunit			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	hydrogenase (NiFe) small subunit (hydA)	1.12.99.6		3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00638753: hypothetical protein			0	2, 3
0	0	lit-s	majority	Dienelactone hydrolase and related enzymes	3.1.1.45		3	2, 3
lit-s	lit-s	lit-s	all-same	Dienelactone hydrolase and related enzymes			3	1, 2, 3
0	0	base_lit-s	majority	Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)			3	2, 3
base_one HP	base_one HP	0	majority	Putative membrane protein			1	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
pfam-sh	pfam-sh	pfam-sh	all-same	outer membrane transport energization protein ExbD (TC 2.C.1.1.1)			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	outer membrane transport energization protein ExbB (TC 2.C.1.1.1)			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	cystathionine beta-lyase, bacterial	4.4.1.8		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Uncharacterized membrane-associated protein			3	1, 2, 3
pfam-sh	0	0	majority	transcriptional regulator, AraC family			3	1, 2
gs-sh	0	0	majority	Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family	1.1.-		3	1, 2
base_ec	0	0	majority	Aldo/keto reductases, related to diketogulonate reductase	1.1.1.274		3	1, 2
base_one HP	base_one HP	gs-sh	all-same	Protein of unknown function (DUF3828)./Lumazine-binding domain.			2	2, 3
gs-sh	0	0	all-same	Murein lipoprotein			2	1, 2
0	0	gs-sh	majority	uncharacterized radical SAM protein YgiQ			3	2, 3
gs-sh	orth	map	all-same	cell division protein SufI			3	1, 2, 3
lit-s	base_lit-s	base_ec	all-same	1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	2.3.1.51		3	1, 2, 3
base_tigr	gs-sh	orth	all-same	DNA topoisomerase IV subunit A	5.99.1.-,5.99.1.3		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	ABC-type oligopeptide transport system, periplasmic component			3	1, 2, 3
gs-sh	0	0	majority	putative zinc finger/helix-turn-helix protein, YgiT family			3	1, 2
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
gs-sh	gs-sh	gs-sh	all-same	DNA gyrase inhibitor			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Protein ygiW precursor			2	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_ec	0	0	majority	Signal transduction histidine kinase	2.7.13.3		3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	lit-s	all-same	FIG00896075: hypothetical protein			1	1, 2, 3
base_tigr	gs-sh	orth	all-same	DNA topoisomerase IV subunit B	5.99.1.-,5.99.1.3		3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	Predicted esterase			2	2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	majority	Putative cytoplasmic protein			1	
base_ec	base_lit-s	base_ec	all-same	nudix-type nucleoside diphosphatase, YffH/AdpP family	3.6.1.13		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	outer membrane protein tolC (1.B.17.1.1)			3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	gs-sh	all-same	Uncharacterized protein ygiD			1	2, 3
gs-sh	lit-s	map	all-same	Predicted divalent heavy-metal cations transporter			3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00638054: hypothetical protein			0	2, 3
base_ec	base_ec	base_ec	all-same	3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12)	4.1.99.12		3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG01200701: hypothetical protein			0	2, 3
0	0	gs-sh	majority	P pilus assembly protein, pilin FimA			3	2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	gs-sh	majority	P pilus assembly protein, porin PapC			3	2, 3
0	0	gs-sh	majority	P pilus assembly protein, chaperone PapD			3	2, 3
lit-s	0	0	all-same	Fimbrial protein.			2	1, 2
gs-sh	lit-s	tf_idf	all-same	Glycogen synthesis protein.			3	1, 2, 3
gs-sh	0	lit-s	all-same	FIG00637968: hypothetical protein			1	1, 2, 3
gs-sh	lit-s	0	all-same	Inner membrane protein YqiK			2	1, 2, 3
gs-sh	0	0	majority	D-alpha,beta-D-heptose 7-phosphate 1-kinase/D-beta-D-heptose 1-phosphate adenylyltransferase	2.7.7.70, 2.7.1.167,2.7.1.167, 2.7.7.70		3	1, 2
gs-sh	map	base_ec	all-same	Glutamine synthetase adenylyltransferase	2.7.7.42		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			2	
base_both miss	base_one miss	base_one miss	all-hp	hypothetical protein	HP		0	
lit-s	lit-s	lit-s	all-same	SH3 domain protein			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	tRNA nucleotidyltransferase/poly(A) polymerase	2.7.7.72, 3.1.4.-, 3.1.3.-		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	undecaprenyl-diphosphatase UppP	3.6.1.27		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	dihydroneopterin aldolase	4.1.2.25		3	1, 2, 3
base_tigr	0	0	majority	acyl-phosphate glycerol-3-phosphate acyltransferase	2.3.1.15		3	1, 2
gs-sh	gs-sh	gs-sh	all-same	transcriptional regulator, LysR family			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region	4.2.1.32		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region	4.2.1.32		3	1, 2, 3
gs-sh	0	0	majority	anion transporter			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	O-sialoglycoprotein endopeptidase (EC 3.4.24.57)	3.4.24.57		3	1, 2, 3
base_tigr	map	lit-s	all-same	SSU ribosomal protein S21P			3	1, 2, 3
lit-s	base_lit-s	lit-s	all-same	DNA primase (EC 2.7.7.-)	2.7.7.-		3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	RNA polymerase, sigma 70 subunit, RpoD			3	1, 2, 3
gs-sh	0	0	majority	G/U mismatch-specific uracil-DNA glycosylase (EC 3.2.2.-)	3.2.2.-		3	1, 2
0	0	orth	majority	Siderophore-interacting protein			3	2, 3
pfam-sh	pfam-sh	lit-s	all-same	transcriptional regulator, PadR family			3	1, 2, 3
gs-sh	gs-sh	map	all-same	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor			3	1, 2, 3
base_tigr	base_ec	base_ec-d	all-same	diamine aminotransferase apoenzyme	2.6.1.82,2.6.1.29		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	EMAP domain			3	1, 2, 3
pfam-sh	0	0	majority	transcriptional regulator, LacI family			3	1, 2
base_ec	0	0	majority	Beta-galactosidase/beta-glucuronidase	3.2.1.23		3	1, 2
base_one HP	base_one HP	orth	all-same	Beta-galactosidase, beta subunit			2	2, 3
gs-sh	gs-sh	map	all-same	amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)			3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	FIG00639150: hypothetical protein			0	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_ec	base_ec	base_ec	all-same	2,4-dienoyl-CoA reductase (EC 1.3.1.34)	1.3.1.34		3	1, 2, 3
gs-sh	0	0	majority	Predicted transcription regulator containing HTH domain			3	1, 2
gs-sh	0	lit-s	all-same	FIG00639506: hypothetical protein			1	1, 2, 3
base_ec	gs-sh	gs-sh	all-same	16S RNA G1207 methylase RsmC	2.1.1.174		3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	Predicted metal-dependent hydrolase			2	2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	lit-s	lit-s	all-same	integral membrane protein, TerC family			3	1, 2, 3
0	lit-s	0	majority	Na+/serine symporter			3	1, 3
gs-sh	lit-s	gs-sh	all-same	Bacterial inner membrane protein.			3	1, 2, 3
gs-sh	lit-s	base_ec	all-same	D-altronate dehydratase (EC 4.2.1.7)	4.2.1.7		3	1, 2, 3
0	0	base_ec	majority	D-glucuronate isomerase (EC 5.3.1.12)	5.3.1.12		3	2, 3
gs-sh	lit-s	map	all-same	D-galactonate transporter			3	1, 2, 3
gs-sh	0	0	majority	transcriptional regulator, GntR family			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	Uncharacterized membrane-associated protein			3	1, 2, 3
lit-s	0	0	majority	SecD export protein N-terminal TM region.			3	1, 2
gs-sh	0	0	majority	Valyl-tRNA synthetase			3	1, 2
base_one HP	base_one HP	0	majority	Uncharacterized membrane protein YqjD			1	
gs-sh	lit-s	map	all-same	Predicted membrane protein			3	1, 2, 3
lit-s	map	pfam-sh	all-same	YqjK-like protein.			3	1, 2, 3
gs-sh	lit-s	map	all-same	Predicted membrane protein			3	1, 2, 3
lit-s	0	0	majority	Predicted glutathione S-transferase			3	1, 2
gs-sh	base_one HP	base_one HP	all-same	Predicted membrane protein			2	1, 2
gs-sh	lit-s	map	all-same	Predicted membrane protein			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Transcriptional regulator			3	1, 2, 3
gs-sh	lit-s	orth	all-same	Pirin-related protein			3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	Uncharacterized protein YhaL			1	1, 2
0	0	0	man-rest	MANUAL-REST			2	
gs-sh	orth	map	all-same	Amino acid permeases			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	L-serine dehydratase, iron-sulfur-dependent, single chain form	4.3.1.17		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	endoribonuclease L-PSP, putative			3	1, 2, 3
base_tigr	0	0	majority	keto acid formate lyase	2.3.1.54,2.3.1.-		3	1, 2
base_tigr	base_ec-d	0	majority	propanoate kinase/acetate kinase	2.7.2.15,2.7.2.-, 2.7.2.1		3	1, 2
base_lit-s	0	0	majority	serine transporter			3	1, 2
base_tigr	base_ec	base_ec	all-same	L-threonine ammonia-lyase (EC 4.3.1.19)	4.3.1.19		3	1, 2, 3
gs-sh	0	0	majority	Transcriptional regulator			3	1, 2
lit-s	base_one HP	base_one HP	all-same	"orf, hypothetical protein"			1	1, 2
lit-s	base_one HP	base_one HP	all-same	FIG00638045: hypothetical protein			0	1, 2
base_both miss	base_one HP	base_one HP	all-hp	hypothetical protein	HP		0	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_ec	base_ec-d	base_ec-d	majority	glycerate kinase	2.7.1.31		3	1, 2
base_tigr	base_lit-s	base_ec	all-same	tartronate semialdehyde reductase (EC 1.1.1.60)	1.1.1.60		3	1, 2, 3
base_tigr	base_lit-s	base_ec	all-same	5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20)	4.1.2.20		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	base_ec	base_ec	all-same	galactarate dehydratase (EC 4.2.1.42)	4.2.1.42		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	transcriptional regulator, AbrB family			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Toxin with endonuclease activity YhaV.			3	1, 2, 3
gs-sh	0	0	majority	transcriptional regulator, DeoR family			3	1, 2
base_tigr	base_ec-d	base_ec	all-same	tagatose-bisphosphate aldolase noncatalytic subunit	2.7.1.144		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	PTS system N-acetylgalactosamine-specific EIIB component, Man family (TC 4.A.6.1.4)	2.7.1.69		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	base_ec	majority	N-acetylglucosamine-6-phosphate deacetylase	3.5.1.25		3	2, 3
0	0	0	man-rest	MANUAL-REST			3	
orth	map	base_ec	all-same	tagatose-bisphosphate aldolase catalytic subunit	4.1.2.40		3	1, 2, 3
gs-sh	lit-s	base_ec	all-same	PTS system D-galactosamine-specific EIIB component, Man family (TC 4.A.6.1.5)	2.7.1.69		3	1, 2, 3
base_tigr	0	0	majority	PTS system D-galactosamine-specific EIIC component, Man family (TC 4.A.6.1.5)			3	1, 2
base_tigr	tf_idf	map	all-same	PTS system D-galactosamine-specific EIID component, Man family (TC 4.A.6.1.5)			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	gs-sh	majority	P pilus assembly protein, chaperone PapD			3	2, 3
0	0	gs-sh	majority	P pilus assembly protein, porin PapC			3	2, 3
0	lit-s	0	majority	P pilus assembly protein, pilin FimA			3	1, 3
base_ec	gs-sh	gs-sh	all-same	probable S-adenosylmethionine-dependent methyltransferase, YraL family	2.1.1.198		3	1, 2, 3
gs-sh	0	0	majority	Putative lipoprotein			3	1, 2
base_one HP	base_one HP	0	majority	Predicted endonuclease distantly related to archaeal Holliday junction resolvase			1	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
map	gs-sh	gs-sh	all-same	Predicted permeases			3	1, 2, 3
0	0	orth	majority	Predicted nucleoside-diphosphate-sugar epimerases			3	2, 3
gs-sh	0	lit-s	all-same	FIG01219785: hypothetical protein			1	1, 2, 3
gs-sh	lit-s	map	all-same	intracellular protease, PfpI family	3.2.-		3	1, 2, 3
lit-s	lit-s	lit-s	all-same	Predicted acetyltransferase	2.3.1.-		3	1, 2, 3
0	0	lit-s	majority	Predicted endonuclease containing a URI domain			3	2, 3
base_one HP	base_one HP	lit-s	all-same	Putative lipid carrier protein			2	2, 3
base_one HP	base_one HP	tf_idf	all-same	Collagenase and related proteases	3.4.-		2	2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	0	0	majority	luciferase family oxidoreductase, group 1			3	1, 2
gs-sh	lit-s	map	all-same	aromatic amino acid transport protein			3	1, 2, 3
gs-sh	pfam-sh	map	all-same	ATP-dependent RNA helicase CsdA	3.6.4.13,5.99.1.-		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Lipoprotein NlpI, contains TPR repeats			3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	polyribonucleotide nucleotidyltransferase	2.7.7.8		3	1, 2, 3
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_tigr	0	0	majority	SSU ribosomal protein S15P			3	1, 2
base_tigr	base_ec-d	base_lit-s	all-same	tRNA pseudouridine synthase B	5.4.99.25,4.2.1.70		3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	ribosome-binding factor A			3	1, 2, 3
gs-sh	0	0	majority	bacterial translation initiation factor 2 (bIF-2)			3	1, 2
gs-sh	gs-sh	pfam-sh	all-same	NusA antitermination factor			3	1, 2, 3
gs-sh	0	lit-s	all-same	FIG000325: clustered with transcription termination protein NusA			1	1, 2, 3
base_tigr	base_ec	base_ec	all-same	argininosuccinate synthase (EC 6.3.4.5)	6.3.4.5		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Predicted membrane-associated, metal-dependent hydrolase			3	1, 2, 3
base_tigr	lit-s	gs-sh	all-same	protein translocase subunit secG			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	phosphoglucosamine mutase (EC 5.4.2.10)	5.4.2.10		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	Dihydropteroate synthase (EC 2.5.1.15)	2.5.1.15		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	membrane protease FtsH catalytic subunit (EC 3.4.24.-)	3.4.24.-		3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	23S rRNA Um-2552 2'-O-methyltransferase (EC 2.1.1.166)	2.1.1.166		3	1, 2, 3
lit-s	0	0	majority	putative RNA-binding protein, YhbY family			3	1, 2
lit-s	lit-s	lit-s	all-same	transcription elongation factor GreA			3	1, 2, 3
base_tigr	base_ec	map	all-same	D-Ala-D-Ala peptidase C. Serine peptidase. MEROPS family S13	3.4.16.4, 3.4.21.-		3	1, 2, 3
lit-s	0	0	majority	Obg family GTPase CgtA			3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_tigr	map	lit-s	all-same	LSU ribosomal protein L27P			3	1, 2, 3
base_tigr	map	lit-s	all-same	LSU ribosomal protein L21P			3	1, 2, 3
base_ec	gs-sh	lit-s	all-same	Geranylgeranyl pyrophosphate synthase	2.5.1.90		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	base_lit-s	base_ec	all-same	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)	2.5.1.7		3	1, 2, 3
gs-sh	0	0	majority	Predicted transcriptional regulator, BolA superfamily			3	1, 2
gs-sh	0	0	majority	Predicted NTP binding protein (contains STAS domain)			3	1, 2
gs-sh	0	0	majority	ABC-type transport system involved in resistance to organic solvents, auxiliary component			3	1, 2
gs-sh	0	0	majority	ABC-type transport system involved in resistance to organic solvents, periplasmic component			3	1, 2
gs-sh	0	0	majority	conserved hypothetical integral membrane protein			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	K+-dependent Na+/Ca+ exchanger related-protein			3	1, 2
base_ec	base_ec	base_ec	all-same	KpsF/GutQ family protein	5.3.1.13		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family	3.1.3.45		3	1, 2, 3
gs-sh	0	0	all-same	Uncharacterized protein YrbK clustered with lipopolysaccharide transporters			2	1, 2
base_lit-s	0	0	majority	lipopolysaccharide transport periplasmic protein LptA			3	1, 2
gs-sh	0	0	majority	ABC-type (unclassified) transport system, ATPase component	3.6.3.-		3	1, 2
base_tigr	gs-sh	gs-sh	all-same	RNA polymerase, sigma 54 subunit, RpoN/SigL			3	1, 2, 3
base_lit-s	gs-sh	gs-sh	all-same	ribosomal subunit interface protein			3	1, 2, 3
base_lit-s	base_lit-s	base_lit-s	all-same	PTS IIA-like nitrogen-regulatory protein PtsN	2.7.1.69		3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	Predicted P-loop-containing kinase			2	2, 3
gs-sh	0	0	majority	HPr-like nitrogen-regulatory protein NPr			3	1, 2
base_lit-s	lit-s	lit-s	all-same	monofunctional biosynthetic peptidoglycan transglycosylase	2.4.1.-		3	1, 2, 3
lit-s	0	0	majority	PhoP regulatory network protein YrbL.			3	1, 2
gs-sh	orth	orth	all-same	Uncharacterized protein involved in an early stage of isoprenoid biosynthesis			3	1, 2, 3
base_ec	lit-s	gs-sh	all-same	PAS/PAC sensor hybrid histidine kinase (EC 2.7.13.3)	2.7.13.3		3	1, 2, 3
lit-s	0	0	majority	radical SAM protein, TIGR01212 family			3	1, 2
base_ec-d	base_ec	base_ec-d	majority	glutamate synthase (NADPH) large subunit	1.4.1.14, 1.4.1.13,1.4.1.13		3	1, 3
base_ec-d	base_ec	base_ec-d	majority	glutamate synthase (NADPH) small subunit	1.4.1.14, 1.4.1.13,1.4.1.13		3	1, 3
base_one HP	base_one HP	0	majority	Beta-fimbriae probable major subunit			1	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			3	
lit-s	base_one HP	base_one HP	all-same	Uncharacterized protein yhcE			1	1, 2
0	0	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	0	majority	Putative uncharacterized protein YhcG			1	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	base_ec	majority	N-acetylmannosamine kinase (EC 2.7.1.60)	2.7.1.60		3	2, 3
map	lit-s	base_ec	all-same	Putative N-acetylmannosamine-6-phosphate epimerase	5.1.3.9		3	1, 2, 3
base_lit-s	0	0	majority	putative sialic acid transporter			3	1, 2
base_lit-s	base_lit-s	base_lit-s	all-same	N-acetylneuraminate lyase	4.1.3.3		3	1, 2, 3
gs-sh	map	orth	all-same	transcriptional regulator, GntR family			3	1, 2, 3
0	lit-s	0	majority	c4-dicarboxylate anaerobic carrier family protein			3	1, 3
lit-s	0	0	majority	Stringent starvation protein B			3	1, 2
lit-s	map	orth	all-same	Glutathione S-transferase			3	1, 2, 3
gs-sh	0	0	majority	SSU ribosomal protein S9P			3	1, 2
base_tigr	0	0	majority	LSU ribosomal protein L13P			3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			2	
gs-sh	gs-sh	pfam-sh	all-same	DegQ peptidase. Serine peptidase. MEROPS family S01B	3.4.21.-		3	1, 2, 3
base_tigr	pfam-sh	pfam-sh	all-same	DegS peptidase. Serine peptidase. MEROPS family S01B	3.4.21.-		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	malate dehydrogenase (NAD) (EC 1.1.1.37)	1.1.1.37		3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	transcriptional regulator, ArgR family			3	1, 2, 3
base_one HP	base_one HP	0	majority	probable exported protein YPO3518			1	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	0	0	majority	Predicted membrane protein			3	1, 2
base_tigr	map	gs-sh	all-same	RND family efflux transporter, MFP subunit			3	1, 2, 3
base_one HP	base_one HP	0	majority	probable membrane protein YPO3684			1	
gs-sh	0	0	majority	Transcriptional regulator			3	1, 2
0	0	gs-sh	majority	microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62			3	2, 3
base_one HP	base_one HP	0	majority	FIG005080: Possible exported protein			1	
gs-sh	gs-sh	gs-sh	all-same	RNAse G	3.1.26.-,3.1.4.-		3	1, 2, 3
base_tigr	lit-s	map	all-same	MAF protein			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	rod shape-determining protein MreD			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	rod shape-determining protein MreC			3	1, 2, 3
lit-s	lit-s	lit-s	all-same	rod shape-determining protein MreB			3	1, 2, 3
gs-sh	map	orth	all-same	diguanylate cyclase/phosphodiesterase			3	1, 2, 3
orth	0	0	majority	putative quinone oxidoreductase, YhdH/YhfP family			3	1, 2
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
base_tigr	lit-s	orth	all-same	biotin carboxyl carrier protein			3	1, 2, 3
base_lit-s	base_ec	base_ec-d	all-same	acetyl-CoA carboxylase, biotin carboxylase subunit	6.4.1.2, 6.3.4.14		3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	Predicted membrane protein			2	2, 3
base_lit-s	0	0	majority	sodium/pantothenate symporter			3	1, 2
base_tigr	lit-s	map	all-same	[LSU ribosomal protein L11P]-lysine N-methyltransferase (EC 2.1.1.-)	2.1.1.-		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	tRNA-U20-dihydrouridine synthase	1.-		3	1, 2, 3
lit-s	lit-s	base_lit-s	all-same	DNA-binding protein Fis			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	DNA modification methylase	2.1.1.72		3	1, 2, 3
base_one HP	base_one HP	0	majority	Putative periplasmic protein			1	
orth	map	pfam-sh	all-same	transcriptional regulator, TetR family			3	1, 2, 3
gs-sh	0	0	majority	RND family efflux transporter, MFP subunit			3	1, 2
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
base_tigr	0	0	majority	The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family			3	1, 2
lit-s	base_one HP	base_one HP	all-same	probable lipoprotein			1	1, 2
base_one HP	0	base_one HP	majority	FIG00642917: hypothetical protein			1	
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	0	0	majority	amino acid ABC transporter membrane protein 1, PAAT family (TC 3.A.1.3.-)			3	1, 2
gs-sh	0	0	majority	amino acid ABC transporter membrane protein 2, PAAT family (TC 3.A.1.3.-)			3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_one HP	base_one HP	0	majority	FIG034389 (not subsystem-based): hypothetical protein			1	
gs-sh	orth	orth	all-same	Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	shikimate dehydrogenase (EC 1.1.1.25)	1.1.1.25		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	translation factor SUA5			3	1, 2, 3
base_one miss	base_both miss	base_one miss	majority	Zn-finger domain associated with topoisomerase type I			1	
base_both miss	base_one miss	base_one miss	all-hp	hypothetical protein	HP		0	
base_one HP	base_one HP	0	majority	Protein of unknown function Smg			1	
base_lit-s	0	0	majority	DNA protecting protein DprA			3	1, 2
base_tigr	base_ec	base_ec	all-same	peptide deformylase (EC 3.5.1.88)	3.5.1.88		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	methionyl-tRNA formyltransferase (EC 2.1.2.9)	2.1.2.9		3	1, 2, 3
base_tigr	gs-sh	base_ec	all-same	16S rRNA m(5)C-967 methyltransferase (EC 2.1.1.176)	2.1.1.176		3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	K+ transport systems, NAD-binding component			3	1, 2, 3
base_one miss	base_both miss	base_one miss	all-hp	hypothetical protein	HP		0	
base_lit-s	gs-sh	orth	all-same	large conductance mechanosensitive channel protein			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	Zn(II)-responsive transcriptional regulator			3	1, 2, 3
base_one HP	base_one HP	0	majority	FIG004614: Putative cytoplasmic protein			1	
base_tigr	map	lit-s	all-same	LSU ribosomal protein L17P			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	DNA-directed RNA polymerase subunit alpha (EC 2.7.7.6)	2.7.7.6		3	1, 2, 3
base_tigr	0	0	majority	SSU ribosomal protein S4P			3	1, 2
base_tigr	0	0	majority	SSU ribosomal protein S11P			3	1, 2
base_tigr	0	0	majority	SSU ribosomal protein S13P			3	1, 2
base_tigr	lit-s	gs-sh	all-same	protein translocase subunit secY/sec61 alpha			3	1, 2, 3
base_tigr	0	0	majority	LSU ribosomal protein L15P			3	1, 2
base_tigr	0	0	majority	LSU ribosomal protein L30P			3	1, 2
base_tigr	0	0	majority	SSU ribosomal protein S5P			3	1, 2
base_tigr	0	0	majority	LSU ribosomal protein L18P			3	1, 2
base_tigr	0	0	majority	LSU ribosomal protein L6P			3	1, 2
gs-sh	0	0	majority	Ribosomal protein S8			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	LSU ribosomal protein L5P			3	1, 2
base_tigr	0	0	majority	LSU ribosomal protein L24P			3	1, 2
base_tigr	0	0	majority	LSU ribosomal protein L14P			3	1, 2
base_tigr	0	0	majority	SSU ribosomal protein S17P			3	1, 2
base_tigr	0	0	majority	LSU ribosomal protein L29P			3	1, 2
base_tigr	0	0	majority	LSU ribosomal protein L16P			3	1, 2
base_tigr	0	0	majority	SSU ribosomal protein S3P			3	1, 2
base_tigr	0	0	majority	LSU ribosomal protein L22P			3	1, 2
gs-sh	0	0	majority	SSU ribosomal protein S19P			3	1, 2
base_tigr	0	0	majority	LSU ribosomal protein L2P			3	1, 2
gs-sh	0	0	majority	LSU ribosomal protein L23P			3	1, 2
base_tigr	0	0	majority	LSU ribosomal protein L4P			3	1, 2
base_tigr	0	0	majority	LSU ribosomal protein L3P			3	1, 2
base_tigr	0	0	majority	SSU ribosomal protein S10P			3	1, 2
gs-sh	lit-s	map	all-same	type II secretion system protein B			3	1, 2, 3
0	lit-s	0	majority	type II secretion system protein A			3	1, 3
base_tigr	0	0	majority	type II secretion system protein C (GspC)			3	1, 2
base_tigr	orth	tf_idf	all-same	type II secretion system protein D (GspD)			3	1, 2, 3
base_tigr	tf_idf	orth	all-same	general secretory pathway protein E			3	1, 2, 3
base_tigr	orth	tf_idf	all-same	type II secretion system protein F (GspF)			3	1, 2, 3
gs-sh	orth	map	all-same	type II secretion system protein G (GspG)			3	1, 2, 3
gs-sh	0	0	majority	type II secretion system protein H (GspH)			3	1, 2
gs-sh	0	0	majority	type II secretion system protein I (GspI)			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	0	0	majority	type II secretion system protein L (GspL)			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	type 4 prepilin peptidase 1 (EC:3.4.23.43). Aspartic peptidase. MEROPS family A24A	3.4.23.43, 2.1.1.-		3	1, 2
base_lit-s	lit-s	lit-s	all-same	bacterioferritin			3	1, 2, 3
lit-s	lit-s	base_lit-s	all-same	Bacterioferritin-associated ferredoxin			3	1, 2, 3
0	0	base_ec-d	man-rest	MANUAL-REST			3	
lit-s	lit-s	lit-s	all-same	translation elongation factor TU			3	1, 2, 3
gs-sh	lit-s	map	all-same	translation elongation factor 2 (EF-2/EF-G)			3	1, 2, 3
base_tigr	0	0	majority	SSU ribosomal protein S7P			3	1, 2
base_tigr	0	0	majority	SSU ribosomal protein S12P			3	1, 2
base_lit-s	gs-sh	gs-sh	all-same	sulfur relay protein TusB/DsrH			3	1, 2, 3
base_lit-s	gs-sh	gs-sh	all-same	sulfur relay protein TusC/DsrF			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	sulfur relay protein TusD/DsrE	2.8.1.-		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			2	
base_ec	base_ec	base_ec	all-same	FKBP-type peptidyl-prolyl cis-trans isomerases 1	5.2.1.8		3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	Protein slyX			2	1, 2, 3
base_ec	base_ec	base_ec	all-same	FKBP-type peptidyl prolyl cis-trans isomerase/Apo-metallochaperone SlyD	5.2.1.8		3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	lit-s	gs-sh	all-same	Kef-type potassium/proton antiporter, CPA2 family (TC 2.A.37.1)			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	lit-s	all-same	FIG01199774: hypothetical protein			0	2, 3
0	0	base_ec	majority	Phosphoribulokinase	2.7.1.19		3	2, 3
gs-sh	orth	map	all-same	Predicted redox protein, regulator of disulfide bond formation			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	0	0	all-same	integral membrane protein, YccS/YhfK family			2	1, 2
base_ec-d	base_ec-d	base_ec	majority	acetylornithine and succinylornithine transaminases/succinylornithine transaminase family	2.6.1.11, 2.6.1.17		3	2, 3
base_ec	base_ec	base_ec	all-same	aminodeoxychorismate synthase, glutamine amidotransferase subunit	2.6.1.85		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	lit-s	all-same	FIG01045643: hypothetical protein			0	2, 3
base_ec	base_ec	base_ec	all-same	Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family	5.2.1.8		3	1, 2, 3
gs-sh	lit-s	map	all-same	Major Facilitator Superfamily.			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	assimilatory nitrite reductase (NAD(P)H) large subunit precursor (EC 1.7.1.4)	1.7.1.4		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	assimilatory nitrite reductase (NAD(P)H) small subunit (EC 1.7.1.4)	1.7.1.4		3	1, 2, 3
orth	tf_idf	map	all-same	formate/nitrite transporter			3	1, 2, 3
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	majority	putative outer membrane lipoprotein			1	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	Sugar kinases, ribokinase family	2.7.1.-		3	1, 2
gs-sh	0	0	majority	transcriptional regulator, GntR family			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	0	majority	Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain			1	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	lit-s	majority	Phosphopentomutase			3	2, 3
0	lit-s	0	majority	Predicted amino acid racemase			3	1, 3
lit-s	0	0	majority	PRD domain.			3	1, 2
lit-s	base_one HP	base_one HP	all-same	Hypothetical protein YhfZ			1	1, 2
base_both miss	base_one HP	base_one HP	all-hp	hypothetical protein	HP		0	
base_tigr	base_ec	base_ec	all-same	tryptophanyl-tRNA synthetase (EC 6.1.1.2)	6.1.1.2		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	phosphoglycolate phosphatase	3.1.3.18		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	ribulose-5-phosphate 3-epimerase (EC 5.1.3.1)	5.1.3.1		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	DNA adenine methylase Dam	2.1.1.72		3	1, 2, 3
gs-sh	0	0	all-same	"DamX, an inner membrane protein involved in bile resistance"			2	1, 2
base_tigr	base_lit-s	base_ec	all-same	3-dehydroquinate synthase (EC 4.2.3.4)	4.2.3.4		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	shikimate kinase (EC 2.7.1.71)	2.7.1.71		3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	type IV pilus secretin (or competence protein) PilQ			3	1, 2, 3
base_one HP	base_one HP	gs-sh	all-same	Type IV pilus biogenesis protein PilP			1	2, 3
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
0	0	pfam-sh	majority	Tfp pilus assembly protein PilN			3	2, 3
lit-s	base_one HP	base_one HP	all-same	Type IV pilus biogenesis protein PilM			1	1, 2
lit-s	gs-sh	map	all-same	penicillin-binding protein, 1A family	2.4.1.-, 3.4.-		3	1, 2, 3
gs-sh	lit-s	map	all-same	NTP pyrophosphohydrolases including oxidative damage repair enzymes	3.6.1.-		3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_tigr	0	0	majority	haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED			3	1, 2
gs-sh	0	0	majority	heat shock protein Hsp15			3	1, 2
gs-sh	tf_idf	pfam-sh	all-same	Disulfide bond chaperones of the HSP33 family			3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_tigr	base_ec	base_ec	all-same	phosphoenolpyruvate carboxykinase (ATP)	4.1.1.49		3	1, 2, 3
base_ec	0	0	majority	Signal transduction histidine kinase	2.7.13.3		3	1, 2
gs-sh	gs-sh	gs-sh	all-same	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	transcription elongation factor GreB			3	1, 2, 3
gs-sh	0	0	majority	Transcriptional accessory protein			3	1, 2
gs-sh	lit-s	orth	all-same	Fe2+ transport system protein A			3	1, 2, 3
gs-sh	lit-s	map	all-same	ferrous iron transporter FeoB			3	1, 2, 3
gs-sh	0	0	majority	Predicted transcriptional regulators			3	1, 2
base_tigr	0	0	all-same	conserved hypothetical protein (putative transposase or invertase)			2	1, 2
base_tigr	0	0	majority	carboxylesterase BioH (pimeloyl-CoA synthesis)	3.1.1.85		3	1, 2
base_lit-s	0	0	majority	comF family protein			3	1, 2
gs-sh	0	0	majority	IscR-regulated protein YhgI			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	gluconate permease GntT (TC 2.A.8.1.4)			3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	4-alpha-glucanotransferase	2.4.1.25		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	glycogen/starch/alpha-glucan phosphorylases	2.4.1.1		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	ATP-dependent transcriptional regulator			3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	RNA 3'-phosphate cyclase	6.5.1.4		3	1, 2, 3
gs-sh	0	0	all-same	"RNA-2',3'-PO4:RNA-5'-OH ligase"			2	1, 2
gs-sh	gs-sh	gs-sh	all-same	transcriptional regulator, DeoR family			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	gs-sh	gs-sh	all-same	Uncharacterized membrane protein (homolog of Drosophila rhomboid)			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	thiosulfate sulfurtransferase (EC 2.8.1.1)	2.8.1.1		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	homodimeric glycerol 3-phosphate dehydrogenase (quinone) (EC 1.1.5.3)	1.1.5.3		3	1, 2, 3
base_one HP	base_one HP	base_lit-s	all-same	hypothetical protein			1	2, 3
base_tigr	base_ec	base_ec	all-same	glycogen/starch/alpha-glucan phosphorylases	2.4.1.1		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	glycogen synthase (ADP-glucose)	2.4.1.21		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	glucose-1-phosphate adenylyltransferase	2.7.7.27		3	1, 2, 3
base_lit-s	0	0	majority	glycogen debranching enzyme GlgX	3.2.1.-		3	1, 2
base_tigr	base_ec	base_ec	all-same	alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase	2.4.1.18		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	aspartate semialdehyde dehydrogenase (EC 1.2.1.11)	1.2.1.11		3	1, 2, 3
base_one HP	base_one HP	gs-sh	all-same	membrane protein, MarC family			2	2, 3
gs-sh	0	0	majority	gluconate transporter			3	1, 2
base_ec	base_ec	base_ec	all-same	carbohydrate kinase, thermoresistant glucokinase family	2.7.1.12		3	1, 2, 3
gs-sh	gs-sh	orth	all-same	transcriptional regulator, LacI family			3	1, 2, 3
gs-sh	0	0	majority	Pirin-related protein			3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	lit-s	0	majority	Acetyltransferases, including N-acetylases of ribosomal proteins	2.3.1.-		3	1, 3
base_tigr	base_one HP	base_one HP	all-same	type VI secretion system effector, Hcp1 family			2	1, 2
base_one HP	0	base_one HP	majority	Hypothetical protein yrhA			1	
base_one miss	base_both miss	base_one miss	majority	Transposase and inactivated derivatives			1	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
lit-s	base_one HP	base_one HP	all-same	Hypothetical protein yrhB			1	1, 2
base_tigr	base_ec	base_ec	all-same	gamma-glutamyltransferase 1 (EC:2.3.2.2). Threonine peptidase. MEROPS family T03	2.3.2.2		3	1, 2, 3
base_ec	base_ec	base_lit-s	all-same	Glycerophosphoryl diester phosphodiesterase	3.1.4.46		3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00638953: hypothetical protein			0	2, 3
base_ec	0	0	majority	glycerol 3-phosphate ABC transporter ATP-binding protein	3.6.3.20		3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	gs-sh	gs-sh	all-same	L-leucine ABC transporter ATP-binding protein/L-isoleucine ABC transporter ATP-binding protein/L-valine ABC transporter ATP-binding protein			3	1, 2, 3
0	0	gs-sh	majority	L-leucine ABC transporter ATP-binding protein/L-isoleucine ABC transporter ATP-binding protein/L-valine ABC transporter ATP-binding protein			3	2, 3
map	tf_idf	gs-sh	all-same	L-leucine ABC transporter membrane protein/L-isoleucine ABC transporter membrane protein/L-valine ABC transporter membrane protein			3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	L-leucine ABC transporter membrane protein/L-isoleucine ABC transporter membrane protein/L-valine ABC transporter membrane protein			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	L-leucine-binding protein			3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	0	0	majority	L-leucine-binding protein/L-isoleucine-binding protein/L-valine-binding protein			3	1, 2
gs-sh	gs-sh	map	all-same	RNA polymerase, sigma 32 subunit, RpoH			3	1, 2, 3
base_tigr	pfam-sh	lit-s	all-same	cell division protein FtsX			3	1, 2, 3
base_lit-s	gs-sh	gs-sh	all-same	cell division ATP-binding protein FtsE			3	1, 2, 3
base_lit-s	gs-sh	gs-sh	all-same	signal recognition particle-docking protein FtsY			3	1, 2, 3
base_tigr	0	0	majority	16S rRNA m(2)G-966 methyltransferase	2.1.1.171,2.1.1.52		3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	0	majority	Putative receptor			1	
gs-sh	gs-sh	gs-sh	all-same	Predicted membrane protein			3	1, 2, 3
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
gs-sh	gs-sh	gs-sh	all-same	Predicted redox protein, regulator of disulfide bond formation	2.8.1.-		3	1, 2, 3
gs-sh	0	0	majority	conserved hypothetical integral membrane protein			3	1, 2
gs-sh	0	0	all-same	DcrB protein precursor			2	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	gs-sh	all-same	Predicted permease			2	2, 3
0	lit-s	0	majority	Phosphopantetheinyl transferase	2.7.8.-		3	1, 3
base_lit-s	tf_idf	tf_idf	all-same	nickel ABC transporter, nickel/metallophore periplasmic binding protein			3	1, 2, 3
base_lit-s	gs-sh	tf_idf	all-same	nickel ABC transporter, permease subunit NikB			3	1, 2, 3
base_lit-s	gs-sh	tf_idf	all-same	nickel ABC transporter, permease subunit NikC			3	1, 2, 3
base_lit-s	tf_idf	tf_idf	all-same	nickel import ATP-binding protein NikD	3.6.3.24		3	1, 2, 3
base_lit-s	tf_idf	tf_idf	all-same	nickel import ATP-binding protein NikE	3.6.3.24		3	1, 2, 3
base_tigr	pfam-sh	gs-sh	all-same	transcriptional regulator, CopG family			3	1, 2, 3
lit-s	0	0	majority	RHS repeat-associated core domain			3	1, 2
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
gs-sh	0	0	majority	Transposase			3	1, 2
gs-sh	gs-sh	orth	all-same	ABC-type multidrug transport system, permease component			3	1, 2, 3
gs-sh	0	0	majority	ABC-type multidrug transport system, ATPase component			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	lit-s	all-same	FIG00637996: hypothetical protein			0	2, 3
base_one miss	base_both miss	base_one miss	all-hp	hypothetical protein	HP		0	
base_one HP	base_one HP	lit-s	all-same	FIG00638558: hypothetical protein			0	2, 3
gs-sh	0	lit-s	all-same	FIG00638244: hypothetical protein			1	1, 2, 3
base_tigr	0	0	majority	flavoprotein, HI0933 family			3	1, 2
gs-sh	gs-sh	map	all-same	Phosphate/sulphate permeases			3	1, 2, 3
tf_idf	lit-s	tf_idf	all-same	Universal stress protein B (UspB).			3	1, 2, 3
gs-sh	lit-s	orth	all-same	Universal stress protein UspA and related nucleotide-binding proteins			3	1, 2, 3
gs-sh	0	0	majority	amino acid/peptide transporter (Peptide:H+ symporter), bacterial			3	1, 2
lit-s	base_one HP	base_one HP	all-same	Putative SAM-dependent methyltransferase.			2	1, 2
base_ec	base_ec	base_ec	all-same	oligopeptidase A (EC:3.4.24.70). Metallo peptidase. MEROPS family M03A	3.4.24.70		3	1, 2, 3
base_one HP	base_one HP	base_lit-s	all-same	Protein involved in catabolism of external DNA			2	2, 3
base_tigr	base_ec	base_ec	all-same	NADPH-glutathione reductase (EC 1.8.1.7)	1.8.1.7		3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	FIG00638311: hypothetical protein			0	1, 2
gs-sh	gs-sh	orth	all-same	transcriptional regulator, ArsR family			3	1, 2, 3
gs-sh	gs-sh	map	all-same	arsenite efflux membrane protein ArsB (TC 3.A.4.1.1; TC 2.A.45.1.1)			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	arsenate reductase (glutaredoxin)	1.20.4.1		3	1, 2, 3
base_one HP	lit-s	base_one HP	all-same	FIG00638514: hypothetical protein			0	1, 3
0	0	0	man-rest	MANUAL-REST			3	
base_both miss	base_one miss	base_one miss	all-hp	hypothetical protein	HP		0	
gs-sh	0	0	majority	outer membrane lipoprotein, Slp family			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain			3	1, 2, 3
gs-sh	0	0	majority	Uncharacterized membrane protein			3	1, 2
gs-sh	0	0	majority	HdeA/HdeB family.			3	1, 2
gs-sh	map	pfam-sh	all-same	HdeA/HdeB family.			3	1, 2, 3
gs-sh	0	0	all-same	"Membrane transporter HdeD, H-NS repressed"			2	1, 2
gs-sh	tf_idf	map	all-same	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain			3	1, 2, 3
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
gs-sh	lit-s	orth	all-same	RND family efflux transporter, MFP subunit			3	1, 2, 3
gs-sh	0	0	majority	The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family			3	1, 2
gs-sh	base_lit-s	gs-sh	all-same	transcriptional regulator, AraC family			3	1, 2, 3
gs-sh	base_lit-s	gs-sh	all-same	transcriptional regulator, AraC family			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	glutamate decarboxylase (EC 4.1.1.15)	4.1.1.15		3	1, 2, 3
tf_idf	tf_idf	base_ec	all-same	Cytochrome c peroxidase	1.11.1.5		3	1, 2, 3
map	tf_idf	base_ec	all-same	Neutral trehalase	3.2.1.28		3	1, 2, 3
gs-sh	gs-sh	map	all-same	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain			3	1, 2, 3
base_one HP	base_one HP	gs-sh	all-same	transcriptional regulator, LysR family			2	2, 3
gs-sh	lit-s	map	all-same	ribonuclease, putative			3	1, 2, 3
gs-sh	lit-s	orth	all-same	metabolite-proton symporter			3	1, 2, 3
gs-sh	orth	map	all-same	Uncharacterized protein involved in outer membrane biogenesis			3	1, 2, 3
gs-sh	0	0	majority	FOG: EAL domain			3	1, 2
gs-sh	map	base_ec	all-same	2-keto-3-deoxygluconate kinase (EC 2.7.1.45)	2.7.1.45		3	1, 2, 3
gs-sh	0	0	majority	Predicted Zn-dependent peptidases			3	1, 2
gs-sh	0	0	majority	Na+/H+-dicarboxylate symporters			3	1, 2
base_one miss	base_one HP	base_one HP	all-hp	hypothetical protein	HP		0	
gs-sh	lit-s	gs-sh	all-same	diguanylate cyclase/phosphodiesterase			3	1, 2, 3
gs-sh	lit-s	map	all-same	Flp pilus assembly protein TadD, contains TPR repeats			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Cellulase family 8 (EC 3.2.1.4)	3.2.1.4		3	1, 2, 3
gs-sh	0	0	majority	Bacterial cellulose synthase subunit.			3	1, 2
base_ec	base_ec	base_ec	all-same	cellulose synthase catalytic subunit (UDP-forming)	2.4.1.12		3	1, 2, 3
base_tigr	orth	orth	all-same	cell division protein YhjQ			3	1, 2, 3
base_one HP	base_one HP	0	majority	FIG004405: Putative cytoplasmic protein			1	
base_lit-s	0	0	all-same	cellulose biosynthesis protein BcsE			2	1, 2
base_lit-s	0	0	majority	celllulose biosynthesis operon protein BcsF/YhjT			3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
lit-s	0	0	majority	Toxin Ldr, type I toxin-antitoxin system.			3	1, 2
gs-sh	orth	map	all-same	Amino acid permeases			3	1, 2, 3
base_tigr	map	gs-sh	all-same	oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain			3	1, 2, 3
base_tigr	map	gs-sh	all-same	oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain			3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components			3	1, 2, 3
0	0	gs-sh	majority	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components			3	2, 3
base_both miss	base_one HP	base_one HP	all-hp	hypothetical protein	HP		0	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
gs-sh	0	0	majority	Predicted membrane-associated, metal-dependent hydrolase			3	1, 2
gs-sh	orth	orth	all-same	Oxalate/Formate Antiporter			3	1, 2, 3
base_tigr	0	0	majority	outer membrane autotransporter barrel domain			3	1, 2
base_ec	base_ec	base_ec	all-same	DNA-3-methyladenine glycosylase I (EC 3.2.2.20)	3.2.2.20		3	1, 2, 3
base_tigr	0	0	majority	molybdopterin guanine dinucleotide-containing S/N-oxide reductases	1.-		3	1, 2
0	lit-s	0	majority	N-acetylglutamate synthase and related acetyltransferases	2.3.1.-		3	1, 3
gs-sh	0	0	majority	Outer membrane protein and related peptidoglycan-associated (lipo)proteins			3	1, 2
base_ec	0	0	majority	Lactate dehydrogenase and related dehydrogenases	1.1.1.215		3	1, 2
base_one HP	base_one HP	0	majority	probable exported protein YPO4070			1	
0	0	0	man-rest	MANUAL-REST			2	
gs-sh	lit-s	orth	all-same	cold-shock DNA-binding protein family			3	1, 2, 3
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
gs-sh	orth	map	all-same	Hok/gef family.			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_ec	base_ec	base_ec	all-same	glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	6.1.1.14		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	6.1.1.14		3	1, 2, 3
gs-sh	map	pfam-sh	all-same	YsaB-like lipoprotein.			3	1, 2, 3
gs-sh	lit-s	0	all-same	Inner membrane protein YiaH			2	1, 2, 3
gs-sh	lit-s	map	all-same	Predicted membrane protein			3	1, 2, 3
gs-sh	lit-s	map	all-same	Predicted membrane protein			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	xylulokinase (EC 2.7.1.17)	2.7.1.17		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	D-xylose isomerase (EC 5.3.1.5)	5.3.1.5		3	1, 2, 3
base_tigr	0	0	majority	xylose-binding protein			3	1, 2
base_ec-d	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
pfam-sh	gs-sh	gs-sh	all-same	transcriptional regulator, AraC family			3	1, 2, 3
0	0	orth	majority	Uncharacterized FlgJ-related protein			3	2, 3
base_ec	base_ec	base_ec	all-same	Glycosidases	3.2.1.1		3	1, 2, 3
0	0	base_ec	majority	valine-pyruvate aminotransferase apoenzyme (EC 2.6.1.66)	2.6.1.66		3	2, 3
gs-sh	0	0	majority	Fe-S-cluster-containing hydrogenase components 2			3	1, 2
gs-sh	gs-sh	lit-s	all-same	transcriptional regulator, IclR family			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	2,3-diketo-L-gulonate reductase (EC 1.1.1.130)	1.1.1.130		3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	lit-s	gs-sh	all-same	TRAP-type C4-dicarboxylate transport system, small permease component			3	1, 2, 3
base_lit-s	gs-sh	gs-sh	all-same	TRAP transporter, DctM subunit			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	tripartite ATP-independent periplasmic transporter solute receptor, DctP family			3	1, 2, 3
gs-sh	base_lit-s	map	all-same	3-keto-L-gulonate kinase/L-xylulose kinase	2.7.1.53,2.7.1.-, 2.7.1.53		3	1, 2, 3
base_ec	orth	lit-s	all-same	3-keto-L-gulonate 6-phosphate decarboxylase (EC 4.1.1.85)	4.1.1.85		3	1, 2, 3
0	0	lit-s	majority	L-xylulose 5-phosphate 3-epimerase	5.-,5.1.3.22		3	2, 3
base_tigr	base_lit-s	base_ec	all-same	L-ribulose 5-phosphate 4-epimerase (EC 5.1.3.4)	5.1.3.4		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Outer membrane protein V			3	1, 2, 3
gs-sh	0	0	majority	Multidrug resistance efflux pump			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	Transcriptional regulator			3	1, 2, 3
gs-sh	orth	0	all-same	GTPase	3.6.1.-		2	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	FIG00638635: hypothetical protein			0	1, 2
gs-sh	lit-s	map	all-same	NAD-dependent aldehyde dehydrogenases	1.2.1.-		3	1, 2, 3
tf_idf	tf_idf	base_ec	all-same	Alcohol dehydrogenase, class IV	1.1.1.1		3	1, 2, 3
gs-sh	lit-s	orth	all-same	selenocysteine-specific translation elongation factor SelB			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1)	2.9.1.1		3	1, 2, 3
lit-s	gs-sh	gs-sh	all-same	Glutathione S-transferase			3	1, 2, 3
lit-s	0	0	majority	RHS repeat-associated core domain			3	1, 2
gs-sh	0	0	majority	FOG: HEAT repeat			3	1, 2
base_tigr	0	0	majority	RHS repeat-associated core domain			3	1, 2
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
gs-sh	0	0	majority	Multidrug resistance efflux pump			3	1, 2
gs-sh	0	0	all-same	GTPase	3.6.1.-		2	1, 2
gs-sh	tf_idf	map	all-same	PTS system D-mannitol-specific IIA component, Fru family (TC 4.A.2.1.2)/PTS system D-mannitol-specific IIB component, Fru family (TC 4.A.2.1.2)/PTS system D-mannitol-specific IIC component, Fru family (TC 4.A.2.1.2)			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	D-mannitol 1-phosphate 5-dehydrogenase (EC 1.1.1.17)	1.1.1.17		3	1, 2, 3
gs-sh	lit-s	map	all-same	mannitol repressor, MtlR			3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	Putative cytoplasmic protein			1	1, 2
base_one HP	base_one HP	0	majority	NAD/FAD-utilizing enzyme apparently involved in cell division			1	
gs-sh	base_lit-s	orth	all-same	L-lactate transport			3	1, 2, 3
gs-sh	gs-sh	pfam-sh	all-same	transcriptional regulator, GntR family			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases	1.1.2.3		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	rRNA methylase, putative, group 2	2.1.1.207		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	serine O-acetyltransferase (EC 2.3.1.30)	2.3.1.30		3	1, 2, 3
0	0	base_ec	majority	glycerol 3-phosphate dehydrogenase (NAD(P)+) (EC 1.1.1.94)	1.1.1.94		3	2, 3
base_tigr	pfam-sh	map	all-same	protein translocase subunit secB			3	1, 2, 3
base_tigr	0	0	majority	Glutaredoxin, GrxC family			3	1, 2
orth	map	lit-s	all-same	Rhodanese-related sulfurtransferase			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	phosphoglycerate mutase (EC 5.4.2.1)	5.4.2.1		3	1, 2, 3
gs-sh	0	0	majority	Membrane-bound metallopeptidase			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			2	
base_ec	base_lit-s	base_ec	all-same	L-threonine 3-dehydrogenase (EC 1.1.1.103)	1.1.1.103		3	1, 2, 3
base_ec	base_lit-s	base_ec	all-same	2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	2.3.1.29		3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_tigr	base_ec	base_ec	all-same	ADP-glyceromanno-heptose 6-epimerase precursor (EC 5.1.3.20)	5.1.3.20		3	1, 2, 3
base_lit-s	gs-sh	tf_idf	all-same	lipopolysaccharide heptosyltransferase II	2.4.-		3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	lipopolysaccharide heptosyltransferase I	2.4.-		3	1, 2, 3
gs-sh	base_lit-s	map	all-same	Lipid A core - O-antigen ligase and related enzymes	6.-		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
lit-s	base_one HP	base_one HP	all-same	Lipopolysaccharide core biosynthesis protein RfaZ			1	1, 2
gs-sh	orth	map	all-same	Predicted unusual protein kinase	2.7.1.-		3	1, 2, 3
gs-sh	0	0	majority	Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases	2.4.1.-		3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	lit-s	map	all-same	Glycosyltransferase	2.4.1.-		3	1, 2, 3
base_one HP	lit-s	base_one HP	all-same	Lipopolysaccharide core biosynthesis protein RfaS			2	1, 3
gs-sh	tf_idf	map	all-same	Lipopolysaccharide kinase (Kdo/WaaP) family.	2.7.1.-		3	1, 2, 3
gs-sh	0	0	majority	Glycosyltransferase	2.4.1.-		3	1, 2
base_tigr	lit-s	lit-s	all-same	lipopolysaccharide heptosyltransferase III, putative	2.4.-		3	1, 2, 3
0	0	base_lit-s	majority	3-deoxy-D-manno-octulosonic-acid transferase	2.4.99.13, 2.4.99.12, 2.4.99.15, 2.4.99.14		3	2, 3
base_ec	base_ec	base_ec	all-same	Phosphopantetheine adenylyltransferase (EC 2.7.7.3)	2.7.7.3		3	1, 2, 3
base_tigr	base_ec	base_ec-d	all-same	formamidopyrimidine-DNA glycosylase (fpg)	4.2.99.18, 3.2.2.23		3	1, 2, 3
base_tigr	0	0	majority	LSU ribosomal protein L33P			3	1, 2
base_tigr	map	lit-s	all-same	LSU ribosomal protein L28P			3	1, 2, 3
base_tigr	lit-s	pfam-sh	all-same	DNA replication and repair protein RadC			3	1, 2, 3
base_tigr	base_ec-d	base_ec-d	majority	Phosphopantothenate-cysteine ligase/Phosphopantothenoylcysteine decarboxylase	4.1.1.36, 6.3.2.5,6.3.2.5, 4.1.1.36		3	1, 2
base_ec	base_ec	base_ec	all-same	deoxyuridine 5'-triphosphate nucleotidohydrolase (dut)	3.6.1.23		3	1, 2, 3
gs-sh	gs-sh	pfam-sh	all-same	transcriptional regulator, TetR family/cell division inhibitor SlmA			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	orotate phosphoribosyltransferase (EC 2.4.2.10)	2.4.2.10		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	RNAse PH (EC 2.7.7.56)	2.7.7.56		3	1, 2, 3
base_one HP	base_one HP	0	majority	Protein YicC			1	
base_one HP	lit-s	base_one HP	all-same	DNA-damage-inducible protein D			2	1, 3
base_ec	base_ec	base_ec	all-same	NAD-dependent DNA ligase (contains BRCT domain type II)	6.5.1.2		3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_tigr	base_ec	base_ec	all-same	guanylate kinase (EC 2.7.4.8)	2.7.4.8		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	DNA-directed RNA polymerase subunit omega (EC 2.7.7.6)	2.7.7.6		3	1, 2, 3
base_ec	base_ec-d	base_ec-d	majority	(p)ppGpp synthetase, RelA/SpoT family	3.1.7.2		3	1, 2
base_ec	base_ec	base_ec	all-same	rRNA methylases	2.1.1.34		3	1, 2, 3
base_lit-s	base_lit-s	base_lit-s	all-same	ATP-dependent DNA helicase RecG	3.6.4.12,3.6.1.-		3	1, 2, 3
base_tigr	tf_idf	map	all-same	sodium--glutamate symport carrier (gltS)			3	1, 2, 3
lit-s	0	0	majority	uracil-xanthine permease			3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	lit-s	orth	all-same	Alpha-glucosidases, family 31 of glycosyl hydrolases			3	1, 2, 3
gs-sh	gs-sh	map	all-same	sugar (Glycoside-Pentoside-Hexuronide) transporter			3	1, 2, 3
gs-sh	tf_idf	tf_idf	all-same	sugar efflux transporter			3	1, 2, 3
base_one HP	base_one HP	0	majority	Carboxylate/Amino Acid/Amine Transporter			1	
gs-sh	0	0	majority	lipoprotein, YaeC family			3	1, 2
lit-s	base_one HP	base_one HP	all-same	probable secreted protein STY4010			1	1, 2
gs-sh	0	0	majority	Arabinose efflux permease			3	1, 2
base_one HP	base_one HP	0	majority	probable membrane protein YPO2654			1	
gs-sh	0	0	majority	Permeases			3	1, 2
base_tigr	base_ec	base_ec	all-same	Adenine deaminase (EC 3.5.4.2)	3.5.4.2		3	1, 2, 3
gs-sh	tf_idf	map	all-same	phosphoglycerate transporter family protein			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	phosphoglycerate transporter family protein			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	lit-s	orth	all-same	two component transcriptional regulator, LuxR family			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	acetolactate synthase, small subunit (EC 2.2.1.6)	2.2.1.6		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	acetolactate synthase, large subunit (EC 2.2.1.6)	2.2.1.6		3	1, 2, 3
gs-sh	lit-s	tf_idf	all-same	Multidrug resistance protein			3	1, 2, 3
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
gs-sh	orth	0	all-same	Putative inner membrane protein			2	1, 2, 3
base_one HP	base_one HP	orth	all-same	Predicted membrane protein			2	2, 3
base_one HP	0	base_one HP	majority	FIG00638952: hypothetical protein			1	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			3	
pfam-sh	gs-sh	gs-sh	all-same	transcriptional regulator, AraC family			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases	3.2.1.122		3	1, 2, 3
base_tigr	base_ec-d	0	majority	PTS system, glucose-like IIB component			3	1, 2
0	base_ec-d	0	man-rest	MANUAL-REST			3	
base_tigr	0	0	majority	Predicted permease			3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	0	0	majority	Molecular chaperone (small heat shock protein)			3	1, 2
gs-sh	orth	tf_idf	all-same	Molecular chaperone (small heat shock protein)			3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	base_lit-s	map	all-same	phosphoglycerate transporter family protein/D-galactonate transporter			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_ec	base_ec	base_ec	all-same	L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily	4.2.1.6		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	2-keto-3-deoxy-phosphogalactonate aldolase (EC 4.1.2.21)	4.1.2.21		3	1, 2, 3
gs-sh	gs-sh	base_ec	all-same	2-keto-3-deoxy-galactonokinase	2.7.1.58		3	1, 2, 3
gs-sh	0	0	majority	transcriptional regulator, GntR family			3	1, 2
lit-s	base_one HP	base_one HP	all-same	Putative replicase			1	1, 2
gs-sh	lit-s	map	all-same	HAD-superfamily hydrolase, subfamily IIB			3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00638813: hypothetical protein			0	2, 3
base_tigr	base_ec	base_ec	all-same	DNA gyrase subunit B (EC 5.99.1.3)	5.99.1.3		3	1, 2, 3
lit-s	gs-sh	gs-sh	all-same	DNA replication and repair protein RecF			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	DNA polymerase III, beta subunit (EC 2.7.7.7)	2.7.7.7		3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	chromosomal replication initiator protein DnaA			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	ribonuclease P protein component (EC 3.1.26.5)	3.1.26.5		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	protein translocase subunit yidC			3	1, 2, 3
lit-s	pfam-sh	gs-sh	all-same	tRNA modification GTPase trmE	3.6.-		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	tryptophanase (EC 4.1.99.1)	4.1.99.1		3	1, 2, 3
gs-sh	orth	map	all-same	aromatic amino acid transport protein			3	1, 2, 3
gs-sh	0	0	majority	Arabinose efflux permease			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	Transcriptional regulator			3	1, 2, 3
lit-s	0	0	all-same	Phosphopantetheinyl transferase			2	1, 2
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	0	base_one HP	majority	FIG00638032: hypothetical protein			1	
base_one HP	base_one HP	lit-s	all-same	FIG00638764: hypothetical protein			0	2, 3
0	base_one HP	base_one HP	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	0	0	majority	Maltoporin (phage lambda and maltose receptor)			3	1, 2
0	0	base_ec	majority	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	3.2.1.86		3	2, 3
gs-sh	tf_idf	map	all-same	PTS system beta-glucoside-specific IIA component, Glc family (TC 4.A.1.2.2)/PTS system beta-glucoside-specific IIB component, Glc family (TC 4.A.1.2.2)/PTS system beta-glucoside-specific IIC component, Glc family (TC 4.A.1.2.2)			3	1, 2, 3
gs-sh	tf_idf	map	all-same	transcriptional antiterminator, BglG family			3	1, 2, 3
base_tigr	lit-s	pfam-sh	all-same	phosphate uptake regulator, PhoU			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1)	3.6.3.27		3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1)			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	phosphate ABC transporter membrane protein 1, PhoT family (TC 3.A.1.7.1)			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1)			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	glutamine--fructose-6-phosphate transaminase	2.6.1.16		3	1, 2, 3
base_tigr	base_ec-d	base_ec-d	majority	UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase	2.3.1.157, 2.7.7.23,2.7.7.23, 2.3.1.157		3	1, 2
base_tigr	base_ec	base_ec	all-same	ATP synthase F1 subcomplex epsilon subunit	3.6.3.14		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	ATP synthase F1 subcomplex beta subunit	3.6.3.14		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	ATP synthase, F1 gamma subunit	3.6.3.14		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	proton translocating ATP synthase, F1 alpha subunit	3.6.3.14		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	ATP synthase F1 subcomplex delta subunit	3.6.3.14		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	ATP synthase F0 subcomplex B subunit	3.6.3.14		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	ATP synthase, F0 subunit c	3.6.3.14		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	ATP synthase F0 subcomplex A subunit	3.6.3.14		3	1, 2, 3
0	base_one HP	base_one HP	man-rest	MANUAL-REST			2	
base_tigr	pfam-sh	gs-sh	all-same	16S rRNA m(7)G-527 methyltransferase (EC 2.1.1.170)	2.1.1.170		3	1, 2, 3
base_tigr	base_lit-s	gs-sh	all-same	glucose-inhibited division protein A			3	1, 2, 3
gs-sh	0	0	majority	Flavodoxins			3	1, 2
gs-sh	lit-s	map	all-same	transcriptional regulator, AsnC family			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	aspartate-ammonia ligase (EC 6.3.1.1)	6.3.1.1		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			2	
gs-sh	0	0	majority	MoxR-like ATPases	3.6.3.-		3	1, 2
base_lit-s	0	0	majority	potassium uptake protein			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	ribose transport protein RbsD	5.-		3	1, 2, 3
base_ec-d	0	tf_idf	majority	ribose ABC transporter ATP-binding protein	3.6.3.17		3	2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	gs-sh	gs-sh	all-same	ribose-binding protein			3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	ribokinase	2.7.1.15		3	1, 2, 3
gs-sh	0	0	majority	drug resistance transporter, EmrB/QacA subfamily			3	1, 2
gs-sh	lit-s	orth	all-same	transcriptional regulator, LacI family			3	1, 2, 3
gs-sh	gs-sh	lit-s	all-same	transcriptional regulator, GntR family			3	1, 2, 3
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
gs-sh	gs-sh	gs-sh	all-same	Transcriptional regulator			3	1, 2, 3
base_one HP	base_one HP	gs-sh	all-same	Protein yifE			1	2, 3
0	0	gs-sh	majority	Mg chelatase-related protein			3	2, 3
0	0	base_ec	majority	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain./Thiamine pyrophosphate enzyme, central domain.	2.2.1.6		3	2, 3
lit-s	0	0	majority	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.			3	1, 2
base_ec	base_ec	base_ec	all-same	acetolactate synthase, small subunit (EC 2.2.1.6)	2.2.1.6		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	branched chain amino acid aminotransferase apoenzyme (EC 2.6.1.42)	2.6.1.42		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	dihydroxy-acid dehydratase	4.2.1.9		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	threonine ammonia-lyase, biosynthetic, long form	4.3.1.19		3	1, 2, 3
gs-sh	0	0	majority	Transcriptional regulator			3	1, 2
base_tigr	base_ec	base_ec	all-same	ketol-acid reductoisomerase (EC 1.1.1.86)	1.1.1.86		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Parvulin-like peptidyl-prolyl isomerase	5.2.1.8		3	1, 2, 3
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
base_lit-s	base_lit-s	base_lit-s	all-same	ATP-dependent DNA helicase Rep	3.6.4.12,3.6.1.-		3	1, 2, 3
gs-sh	0	base_ec-d	majority	Exopolyphosphatase	3.6.1.11, 3.6.1.40		3	1, 2
base_ec	lit-s	map	all-same	Superfamily II DNA and RNA helicases	3.6.4.13		3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	thioredoxin			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	transcription termination factor Rho			3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	orf; Unknown function			1	1, 2
base_lit-s	0	0	majority	undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase	2.7.8.33		3	1, 2
gs-sh	0	0	majority	Chain length determinant protein			3	1, 2
base_lit-s	base_lit-s	base_lit-s	all-same	UDP-N-acetylglucosamine 2-epimerase	5.1.3.14		3	1, 2, 3
base_tigr	0	0	majority	nucleotide sugar dehydrogenase	1.1.1.-		3	1, 2
base_tigr	base_ec	base_ec	all-same	dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)	4.2.1.46		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)	2.7.7.24		3	1, 2, 3
base_lit-s	orth	orth	all-same	TDP-D-fucosamine acetyltransferase			3	1, 2, 3
base_tigr	0	0	majority	TDP-4-keto-6-deoxy-D-glucose transaminase			3	1, 2
gs-sh	lit-s	map	all-same	Membrane protein involved in the export of O-antigen and teichoic acid			3	1, 2, 3
gs-sh	base_lit-s	map	all-same	4-alpha-L-fucosyltransferase glycosyl transferase group 56.	2.4.1.-		3	1, 2, 3
lit-s	gs-sh	map	all-same	WzyE protein.	2.4.1.-		3	1, 2, 3
base_tigr	0	0	majority	bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family	2.4.1.-		3	1, 2
0	lit-s	0	majority	amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)			3	1, 3
0	0	orth	majority	anaerobic sulfatase-maturating enzyme			3	2, 3
0	0	base_ec	majority	Arylsulfatase A and related enzymes	3.1.6.1		3	2, 3
gs-sh	0	0	majority	Uncharacterized enzyme of heme biosynthesis			3	1, 2
orth	0	0	majority	Uncharacterized enzyme of heme biosynthesis	2.1.1.107		3	1, 2
gs-sh	gs-sh	base_lit-s	all-same	Uroporphyrinogen-III synthase	4.2.1.75		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	hydroxymethylbilane synthase (EC 2.5.1.61)	2.5.1.61		3	1, 2, 3
tf_idf	tf_idf	base_ec	all-same	adenylate cyclase	4.6.1.1		3	1, 2, 3
base_lit-s	0	0	majority	iron donor protein CyaY			3	1, 2
base_one miss	base_one HP	base_one HP	majority	hypothetical protein			1	
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	base_ec	base_ec	all-same	diaminopimelate epimerase (EC 5.1.1.7)	5.1.1.7		3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	Protein of unknown function DUF484			0	2, 3
base_tigr	lit-s	lit-s	all-same	tyrosine recombinase XerC subunit			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	gs-sh	pfam-sh	all-same	ATP-dependent DNA helicase UvrD	3.6.4.12,3.6.1.-		3	1, 2, 3
base_one HP	lit-s	base_one HP	all-same	Predicted periplasmic protein			1	1, 3
base_tigr	lit-s	gs-sh	all-same	magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)			3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG01047791: hypothetical protein			0	2, 3
base_one HP	base_one HP	base_lit-s	all-same	hypothetical protein			1	2, 3
lit-s	lit-s	lit-s	all-same	rarD protein			3	1, 2, 3
base_one HP	base_one HP	gs-sh	all-same	uncharacterized domain 1			2	2, 3
base_ec-d	tf_idf	tf_idf	all-same	Outer membrane phospholipase A	3.1.1.32		3	1, 2, 3
base_lit-s	base_lit-s	base_lit-s	all-same	ATP-dependent DNA helicase RecQ	3.6.4.12,3.6.1.-		3	1, 2, 3
gs-sh	0	0	majority	The Resistance to Homoserine/Threonine (RhtB) Family protein			3	1, 2
gs-sh	lit-s	map	all-same	The Resistance to Homoserine/Threonine (RhtB) Family protein			3	1, 2, 3
0	0	base_ec	majority	Lysophospholipase	3.1.1.5		3	2, 3
gs-sh	0	0	majority	HAD-superfamily hydrolase, subfamily IIB			3	1, 2
base_one miss	base_both miss	base_one miss	majority	Transcriptional regulator			1	
base_tigr	0	0	all-same	Carboxylate/Amino Acid/Amine Transporter			2	1, 2
base_tigr	base_ec	base_ec	all-same	methionine synthase (B12-independent) (EC 2.1.1.14)	2.1.1.14		3	1, 2, 3
lit-s	map	base_ec	all-same	Dienelactone hydrolase and related enzymes	3.1.1.45		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	uridine phosphorylase	2.4.2.3		3	1, 2, 3
gs-sh	lit-s	0	all-same	DNA recombination protein RmuC			2	1, 2, 3
base_ec-d	gs-sh	gs-sh	all-same	ubiquinone/menaquinone biosynthesis methyltransferases	2.1.1.163, 2.1.1.201		3	1, 2, 3
base_one HP	base_one HP	0	majority	Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes			1	
base_tigr	gs-sh	gs-sh	all-same	2-octaprenylphenol hydroxylase	1.14.13.-		3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	twin arginine-targeting protein translocase, TatA/E family			3	1, 2, 3
base_tigr	gs-sh	map	all-same	Sec-independent protein translocase TatB			3	1, 2, 3
base_tigr	pfam-sh	pfam-sh	all-same	Sec-independent protein translocase TatC			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	transcriptional activator RfaH			3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	Sec-independent protein translocase TatD (EC 3.1.21.-)	3.1.21.-		3	1, 2, 3
base_tigr	gs-sh	map	all-same	3-octaprenyl-4hydroxybenzoate decarboxylase (EC 4.1.1.-)	4.1.1.-		3	1, 2, 3
gs-sh	base_lit-s	base_ec-d	all-same	2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases	1.16.1.3		3	1, 2, 3
base_ec	base_ec-d	base_ec-d	majority	fatty oxidation complex, beta subunit FadA	2.3.1.16		3	1, 2
base_lit-s	base_ec-d	base_ec-d	majority	fatty oxidation complex, alpha subunit FadB	1.1.1.35, 4.2.1.17, 5.1.2.3, 5.3.3.8		3	1, 2
base_ec	base_ec	base_ec	all-same	Xaa-Pro aminopeptidase	3.4.13.9		3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
lit-s	lit-s	lit-s	all-same	potassium uptake protein, TrkH family			3	1, 2, 3
base_ec-d	0	0	man-rest	MANUAL-REST			3	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_one HP	base_one HP	base_both miss	all-hp	hypothetical protein	HP		0	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_tigr	gs-sh	pfam-sh	all-same	molybdopterin guanine dinucleotide biosynthesis accessory protein MobB			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	molybdenum cofactor guanylyltransferase	2.7.7.77		3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	Protein yihD			2	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
lit-s	tf_idf	tf_idf	all-same	Thiol:disulfide interchange protein DsbA			3	1, 2, 3
base_one HP	base_one HP	0	majority	Putative GTP-binding protein			1	
gs-sh	lit-s	gs-sh	all-same	1-acyl-sn-glycerol-3-phosphate acyltransferase			3	1, 2, 3
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
base_ec	base_lit-s	base_ec	all-same	DNA polymerase I (EC 2.7.7.7)	2.7.7.7		3	1, 2, 3
base_tigr	0	0	majority	cell division checkpoint GTPase YihA			3	1, 2
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
gs-sh	0	lit-s	all-same	Protein of unknown function DUF414			1	1, 2, 3
base_tigr	base_ec	base_ec	all-same	coproporphyrinogen III oxidase, anaerobic (EC 1.3.99.22)	1.3.99.22		3	1, 2, 3
base_one HP	base_one HP	base_both miss	all-hp	hypothetical protein	HP		0	
base_tigr	0	0	majority	nitrogen regulation protein NR(I)			3	1, 2
base_ec	0	0	majority	PAS/PAC sensor signal transduction histidine kinase (EC 2.7.13.3)	2.7.13.3		3	1, 2
base_tigr	base_ec	base_ec	all-same	L-glutamine synthetase (EC 6.3.1.2)	6.3.1.2		3	1, 2, 3
base_lit-s	base_lit-s	base_lit-s	all-same	GTP-binding protein TypA/BipA			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	transcriptional regulator, GntR family			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			2	
gs-sh	orth	map	all-same	Sugar phosphate permease			3	1, 2, 3
lit-s	0	0	majority	porin OmpL (TC 1.B.21.2.1)			3	1, 2
gs-sh	0	0	majority	sugar (Glycoside-Pentoside-Hexuronide) transporter			3	1, 2
gs-sh	0	0	majority	sugar (Glycoside-Pentoside-Hexuronide) transporter			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	Sugar kinases, ribokinase family			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	transcriptional regulator, DeoR family			3	1, 2, 3
gs-sh	0	0	majority	haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED			3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_lit-s	base_lit-s	base_lit-s	all-same	D-tyrosyl-tRNA(Tyr) deacylase	3.1.-		3	1, 2, 3
base_tigr	0	0	majority	thioesterase domain, putative			3	1, 2
lit-s	0	0	all-same	Ribbon-helix-helix protein, copG family.			2	1, 2
lit-s	base_one HP	base_one HP	all-same	FIG00638378: hypothetical protein			0	1, 2
base_one HP	base_one miss	base_one HP	all-hp	hypothetical protein	HP		0	
base_tigr	pfam-sh	pfam-sh	all-same	Tat proofreading chaperone FdhE			3	1, 2, 3
base_lit-s	base_ec	tf_idf	all-same	formate dehydrogenase, gamma subunit			3	1, 2, 3
base_tigr	base_ec	map	all-same	formate dehydrogenase (quinone-dependent) iron-sulfur subunit			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	formate dehydrogenase (quinone-dependent) catalytic subunit	1.2.1.2		3	1, 2, 3
0	base_one miss	base_one miss	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	base_one miss	majority	bogus protein			1	
base_lit-s	0	0	majority	formate dehydrogenase family accessory protein FdhD			3	1, 2
base_one HP	base_one HP	lit-s	all-same	FIG00638858: hypothetical protein			0	2, 3
0	lit-s	0	majority	transcriptional antiterminator, BglG family			3	1, 3
gs-sh	0	0	all-same	Cellulase M and related proteins			2	1, 2
lit-s	base_ec-d	0	majority	PTS system IIB component, Fru family (TC 4.A.2)/PTS system IIC component, Fru family (TC 4.A.2)			3	1, 2
gs-sh	orth	base_ec	all-same	PTS system IIA component, Fru family (TC 4.A.2)	2.7.1.69		3	1, 2, 3
base_lit-s	orth	orth	all-same	L-rhamnose 1-epimerase	5.1.3.-		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	L-rhamnulose 1-phosphate aldolase (EC 4.1.2.19)	4.1.2.19		3	1, 2, 3
base_tigr	base_lit-s	base_ec	all-same	L-rhamnose isomerase (EC 5.3.1.14)	5.3.1.14		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	L-rhamnulokinase (EC 2.7.1.5)	2.7.1.5		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	base_lit-s	tf_idf	all-same	RhaT L-rhamnose-proton symporter family protein			3	1, 2, 3
gs-sh	gs-sh	orth	all-same	transcriptional regulator, AraC family			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Superoxide dismutase	1.15.1.1		3	1, 2, 3
base_tigr	map	tf_idf	all-same	2-keto-3-deoxygluconate permease (TC 2.A.10.1.1)			3	1, 2, 3
gs-sh	0	base_lit-s	all-same	Uncharacterized protein conserved in bacteria			1	1, 2, 3
base_ec	0	0	majority	Signal transduction histidine kinase	2.7.13.3		3	1, 2
gs-sh	0	0	majority	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain			3	1, 2
gs-sh	map	lit-s	all-same	P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein			3	1, 2, 3
gs-sh	0	0	majority	cation diffusion facilitator family transporter			3	1, 2
base_tigr	base_lit-s	base_ec	all-same	6-phosphofructokinase (EC 2.7.1.11)	2.7.1.11		3	1, 2, 3
gs-sh	0	0	majority	sulfate/thiosulfate-binding protein			3	1, 2
base_tigr	base_lit-s	base_ec	all-same	CDP-diacylglycerol pyrophosphatase, bacterial type	3.6.1.26		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	triosephosphate isomerase (EC 5.3.1.1)	5.3.1.1		3	1, 2, 3
base_one HP	base_one HP	0	majority	Putative uncharacterized protein YiiQ			1	
base_one HP	base_one HP	lit-s	all-same	Predicted membrane protein			2	2, 3
base_lit-s	base_one HP	base_one HP	all-same	FIG00639264: hypothetical protein			0	1, 2
0	0	0	man-rest	MANUAL-REST			3	
base_ec	base_ec	base_ec	all-same	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	1.18.1.2		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	fructose-1,6-bisphosphatase, class II	3.1.3.11		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	glycerol kinase (EC 2.7.1.30)	2.7.1.30		3	1, 2, 3
gs-sh	lit-s	map	all-same	MIP family channel proteins			3	1, 2, 3
gs-sh	orth	0	all-same	Putative cytoplasmic protein			2	1, 2, 3
base_lit-s	gs-sh	map	all-same	regulator of ribonuclease activity A			3	1, 2, 3
base_tigr	base_ec	map	all-same	1,4-dihydroxy-2-naphthoate prenyltransferase	2.5.1.-, 2.5.1.74,2.5.1.74		3	1, 2, 3
base_lit-s	gs-sh	gs-sh	all-same	ATP-dependent protease HslVU, ATPase subunit			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	HslV component of HslUV peptidase. Threonine peptidase. MEROPS family T01B	3.4.25.2		3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	cell division protein FtsN			3	1, 2, 3
pfam-sh	0	0	majority	transcriptional regulator, LacI family			3	1, 2
base_tigr	gs-sh	gs-sh	all-same	replication restart DNA helicase PriA	3.6.4.-		3	1, 2, 3
base_tigr	0	0	majority	LSU ribosomal protein L31P			3	1, 2
base_one HP	base_one HP	0	majority	Orthopoxvirus protein of unknown function (DUF830).			1	
pfam-sh	pfam-sh	lit-s	all-same	methionine repressor, MetJ			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	cystathionine gamma-synthase (EC 2.5.1.48)	2.5.1.48		3	1, 2, 3
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
base_tigr	base_ec	base_ec	all-same	5,10-methylenetetrahydrofolate reductase (NAD(P)) (EC 1.5.1.20)	1.5.1.20		3	1, 2, 3
base_lit-s	base_ec-d	base_ec-d	majority	catalase/peroxidase HPI	1.11.1.21		3	1, 2
base_one HP	base_one HP	0	majority	Predicted permeases			1	
base_one HP	base_one HP	lit-s	all-same	FIG00638062: hypothetical protein			0	2, 3
base_ec	base_ec	base_ec	all-same	glycerol 2-dehydrogenase (NAD+) (EC 1.1.1.6)	1.1.1.6		3	1, 2, 3
base_tigr	0	0	majority	fructose 6-phosphate aldolase (EC 4.1.2.-)	4.1.2.-		3	1, 2
base_ec-d	base_ec	base_ec-d	majority	Phosphocarrier protein HPr/phosphoenolpyruvate--protein phosphotransferase/PTS system unknown substrate IIA component, Fru family (TC 4.A.2.1.10)	2.7.1.69,2.7.3.9		3	1, 3
base_tigr	0	0	majority	PTS system unknown substrate IIC component, Fru family (TC 4.A.2.1.10)			3	1, 2
base_ec	base_ec	base_ec	all-same	PTS system unknown substrate IIB component 1, Fru family (TC 4.A.2.1.10)	2.7.1.69		3	1, 2, 3
gs-sh	map	base_ec	all-same	pyruvate formate-lyase	2.3.1.54		3	1, 2, 3
map	orth	base_ec	all-same	Pyruvate-formate lyase-activating enzyme	1.97.1.4		3	1, 2, 3
pfam-sh	pfam-sh	lit-s	all-same	transcriptional regulator, AraC family			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	PTS system unknown substrate IIB component 2, Fru family (TC 4.A.2.1.10)	2.7.1.69		3	1, 2, 3
gs-sh	0	0	majority	Predicted membrane-associated, metal-dependent hydrolase			3	1, 2
tf_idf	lit-s	base_ec	all-same	Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31)	4.1.1.31		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	acetylornithine deacetylase (ArgE)	3.5.1.16		3	1, 2, 3
base_tigr	base_lit-s	base_ec	all-same	N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	1.2.1.38		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	N-acetylglutamate kinase (EC 2.7.2.8)	2.7.2.8		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	argininosuccinate lyase (EC 4.3.2.1)	4.3.2.1		3	1, 2, 3
0	0	base_ec	majority	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes	1.6.1.1		3	2, 3
gs-sh	lit-s	orth	all-same	Transcriptional regulator			3	1, 2, 3
gs-sh	gs-sh	pfam-sh	all-same	transcriptional regulator, TetR family			3	1, 2, 3
gs-sh	orth	0	all-same	Putative inner membrane protein			2	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	tRNA (uracil-5-)-methyltransferase	2.1.1.35		3	1, 2, 3
base_tigr	gs-sh	tf_idf	all-same	TonB-dependent vitamin B12 receptor			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	glutamate racemase (EC 5.1.1.3)	5.1.1.3		3	1, 2, 3
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_tigr	base_lit-s	base_ec	all-same	UDP-N-acetylmuramate dehydrogenase (EC 1.1.1.158)	1.1.1.158		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	birA, biotin-[acetyl-CoA-carboxylase] ligase region/BirA biotin operon repressor domain	6.3.4.15		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	pantothenate kinase (EC 2.7.1.33)	2.7.1.33		3	1, 2, 3
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
gs-sh	lit-s	map	all-same	translation elongation factor 1A (EF-1A/EF-Tu)			3	1, 2, 3
base_tigr	lit-s	gs-sh	all-same	protein translocase subunit secE/sec61 gamma			3	1, 2, 3
base_tigr	pfam-sh	lit-s	all-same	transcription antitermination protein nusG			3	1, 2, 3
base_tigr	0	0	majority	LSU ribosomal protein L11P			3	1, 2
base_tigr	0	0	majority	LSU ribosomal protein L1P			3	1, 2
gs-sh	0	0	majority	LSU ribosomal protein L10P			3	1, 2
base_tigr	0	0	majority	LSU ribosomal protein L12P			3	1, 2
base_tigr	base_ec	base_ec	all-same	DNA-directed RNA polymerase subunit beta (EC 2.7.7.6)	2.7.7.6		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	DNA-directed RNA polymerase subunit beta' (EC 2.7.7.6)	2.7.7.6		3	1, 2, 3
base_one HP	lit-s	base_one HP	all-same	Heat shock protein C			2	1, 3
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_tigr	lit-s	gs-sh	all-same	tyrosine lyase ThiH			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	thiazole-phosphate synthase			3	1, 2, 3
base_tigr	pfam-sh	lit-s	all-same	sulfur carrier protein ThiS			3	1, 2, 3
base_tigr	pfam-sh	gs-sh	all-same	[sulfur carrier protein ThiS] adenylyltransferase	2.7.7.73		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	thiamine-phosphate diphosphorylase	2.5.1.3		3	1, 2, 3
base_tigr	pfam-sh	gs-sh	all-same	hydroxymethylpyrimidine synthase			3	1, 2, 3
lit-s	lit-s	base_lit-s	all-same	Regulator of sigma D			3	1, 2, 3
0	0	base_ec	majority	NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding	3.6.1.22		3	2, 3
base_tigr	base_ec	base_ec	all-same	uroporphyrinogen decarboxylase (EC 4.1.1.37)	4.1.1.37		3	1, 2, 3
lit-s	base_ec	base_lit-s	all-same	Endonuclease V	3.1.21.7,3.1.21.-		3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG01200173: hypothetical protein			0	2, 3
gs-sh	base_lit-s	map	all-same	bacterial nucleoid protein HU alpha subunit			3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00638261: hypothetical protein			0	2, 3
gs-sh	lit-s	map	all-same	P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein			3	1, 2, 3
base_ec	0	0	majority	His Kinase A (phospho-acceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	2.7.13.3		3	1, 2
base_ec	base_ec	base_ec	all-same	phosphoribosylamine--glycine ligase (EC 6.3.4.13)	6.3.4.13		3	1, 2, 3
gs-sh	0	0	majority	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains			3	1, 2
base_tigr	base_ec-d	base_ec	all-same	IMP cyclohydrolase (EC 3.5.4.10)/phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)	3.5.4.10, 2.1.2.3		3	1, 2, 3
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_one HP	base_one HP	base_both miss	all-hp	hypothetical protein	HP		0	
base_both miss	base_both miss	base_both miss	all-hp	hypothetical protein	HP		0	
base_one HP	0	base_one HP	majority	FIG00639812: hypothetical protein			1	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_tigr	base_ec	base_ec	all-same	homoserine O-succinyltransferase (EC 2.3.1.46)	2.3.1.46		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	malate synthase (EC 2.3.3.9)	2.3.3.9		3	1, 2, 3
base_both miss	base_one HP	base_one HP	all-hp	hypothetical protein	HP		0	
base_tigr	base_ec	base_ec	all-same	isocitrate lyase (EC 4.1.3.1)	4.1.3.1		3	1, 2, 3
lit-s	0	0	majority	ShET2 enterotoxin, N-terminal region.			3	1, 2
lit-s	0	0	majority	Isocitrate dehydrogenase kinase/phosphatase	2.7.11.5, 3.1.3.-		3	1, 2
gs-sh	lit-s	orth	all-same	transcriptional regulator, IclR family			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	methionine synthase (B12-dependent) (EC 2.1.1.13)	2.1.1.13		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_ec	base_ec	base_ec	all-same	dipeptidase E (EC:3.4.13.21). Serine peptidase. MEROPS family S51	3.4.13.21		3	1, 2, 3
base_lit-s	base_ec-d	lit-s	all-same	ribosomal large subunit pseudouridine synthase F	5.4.99.21,5.4.99.-		3	1, 2, 3
base_one HP	base_one HP	0	majority	YjbD family (DUF3811).			1	
base_ec	base_ec	base_ec	all-same	aspartate kinase (EC 2.7.2.4)	2.7.2.4		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	glucose-6-phosphate isomerase (EC 5.3.1.9)	5.3.1.9		3	1, 2, 3
lit-s	pfam-sh	map	all-same	Exopolysaccharide production protein YjbE.			3	1, 2, 3
base_one HP	base_one HP	0	majority	YjbF outer membrane lipoprotein			1	
0	0	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
gs-sh	lit-s	gs-sh	all-same	Predicted membrane protein			3	1, 2, 3
base_tigr	0	0	majority	MFS transporter, sugar porter (SP) family			3	1, 2
0	0	gs-sh	majority	maltooligosaccharide ABC transporter membrane protein			3	2, 3
0	0	gs-sh	majority	maltooligosaccharide ABC transporter membrane protein			3	2, 3
gs-sh	gs-sh	gs-sh	all-same	maltooligosaccharide-binding protein			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	maltooligosaccharide ABC transporter ATP-binding protein	3.6.3.19		3	1, 2, 3
gs-sh	0	0	majority	Maltoporin (phage lambda and maltose receptor)			3	1, 2
lit-s	base_one HP	base_one HP	all-same	FIG00638409: hypothetical protein			0	1, 2
tf_idf	tf_idf	pfam-sh	all-same	Maltose operon periplasmic protein precursor (MalM).			3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	YjbI protein			1	1, 2
0	0	0	man-rest	MANUAL-REST			3	
base_ec	base_ec	base_ec	all-same	chorismate lyase (EC 4.1.3.40)	4.1.3.40		3	1, 2, 3
base_tigr	gs-sh	base_lit-s	all-same	4-hydroxybenzoate polyprenyltransferase	2.5.1.-,2.5.1.39		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	glycerol-3-phosphate acyltransferase (EC 2.3.1.15)	2.3.1.15		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	diacylglycerol kinase (EC 2.7.1.107)	2.7.1.107		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	SOS-response transcriptional repressor, LexA	3.4.21.88		3	1, 2, 3
base_tigr	0	0	majority	putative efflux protein, MATE family			3	1, 2
base_one HP	base_one HP	gs-sh	all-same	UPF0337 protein yjbJ			1	2, 3
0	0	0	man-rest	MANUAL-REST			3	
lit-s	base_one HP	base_one HP	all-same	FIG00639441: hypothetical protein			0	1, 2
base_one HP	base_one HP	lit-s	all-same	FIG00639441: hypothetical protein			0	2, 3
base_tigr	lit-s	gs-sh	all-same	tRNA-U16,U17-dihydrouridine synthase	1.-		3	1, 2, 3
base_lit-s	base_one HP	base_one HP	all-same	phage shock protein G			2	1, 2
base_ec	base_ec	base_ec	all-same	NADPH:quinone reductase and related Zn-dependent oxidoreductases	1.6.5.5		3	1, 2, 3
base_tigr	lit-s	tf_idf	all-same	primary replicative DNA helicase	3.6.4.12,3.6.1.-		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	alanine racemase (EC 5.1.1.1)	5.1.1.1		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Aspartate/tyrosine/aromatic aminotransferase	2.6.1.57		3	1, 2, 3
base_one HP	base_one miss	base_one HP	all-hp	hypothetical protein	HP		0	
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
base_ec	base_ec-d	base_ec-d	majority	acid phosphatase (EC 3.1.3.2)	3.1.3.2		3	1, 2
base_one HP	base_one HP	0	majority	secondary thiamine-phosphate synthase enzyme			1	
base_one HP	base_one HP	gs-sh	all-same	Protein yjbR			1	2, 3
base_tigr	lit-s	base_lit-s	all-same	Excinuclease ABC subunit A			3	1, 2, 3
gs-sh	lit-s	map	all-same	single-strand binding protein			3	1, 2, 3
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	0	majority	Predicted signal transduction protein containing sensor and EAL domains			1	
gs-sh	lit-s	orth	all-same	transcriptional regulator, AraC family			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	redox-sensitive transcriptional activator SoxR			3	1, 2, 3
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
gs-sh	0	0	majority	Permeases			3	1, 2
base_tigr	tf_idf	map	all-same	sodium/proton antiporter, CPA1 family (TC 2.A.36)			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			2	
base_lit-s	0	0	majority	cation/acetate symporter ActP			3	1, 2
gs-sh	0	0	majority	Predicted membrane protein			3	1, 2
base_tigr	base_ec	base_ec	all-same	acetyl-coenzyme A synthetase (EC 6.2.1.1)	6.2.1.1		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	respiratory nitrite reductase (cytochrome; ammonia-forming) precursor (EC 1.7.2.2)	1.7.2.2		3	1, 2, 3
base_tigr	0	0	majority	respiratory nitrite reductase specific menaquinol--cytochrome-c reductase complex subunit NrfB precursor			3	1, 2
gs-sh	0	0	majority	respiratory nitrite reductase specific menaquinol--cytochrome-c reductase complex Fe-S cluster containing subunit NrfC			3	1, 2
base_tigr	pfam-sh	pfam-sh	all-same	respiratory nitrite reductase specific menaquinol--cytochrome-c reductase complex subunit NrfD	1.10.2.-		3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	respiratory nitrite reductase specific cytochrome c biogenesis protein NrfE			3	1, 2, 3
0	0	gs-sh	majority	respiratory nitrite reductase specific cytochrome c biogenesis protein NrfF			3	2, 3
0	0	gs-sh	majority	respiratory nitrite reductase specific cytochrome c biogenesis protein NrfG			3	2, 3
gs-sh	0	0	majority	Na+/H+-dicarboxylate symporters			3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_tigr	base_ec	base_ec	all-same	formate dehydrogenase alpha subunit (EC 1.2.1.2)	1.2.1.2		3	1, 2, 3
0	0	base_ec	majority	Uncharacterized anaerobic dehydrogenase	1.2.1.2		3	2, 3
gs-sh	0	0	majority	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	0	base_one HP	majority	FIG00637930: hypothetical protein			1	
0	0	0	man-rest	MANUAL-REST			2	
base_ec	base_lit-s	base_ec	all-same	D-allose kinase (EC 2.7.1.55)	2.7.1.55		3	1, 2, 3
gs-sh	0	0	majority	D-allulose 6-phosphate 3-epimerase	5.1.3.-		3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	allose ABC transporter ATP-binding protein			3	1, 2
gs-sh	0	0	majority	allose-binding protein			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	transcriptional regulator, RpiR family			3	1, 2, 3
base_ec	tf_idf	map	all-same	ribose-5-phosphate isomerase (EC 5.3.1.6)	5.3.1.6		3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	FIG00638130: hypothetical protein			0	1, 2
base_tigr	gs-sh	gs-sh	all-same	5-phospho-alpha-D-ribosyl 1,2-cyclic phosphate phosphodiesterase	3.1.4.-		3	1, 2, 3
0	0	orth	majority	Acetyltransferase, GNAT family	2.3.1.-		3	2, 3
base_lit-s	0	base_ec-d	majority	phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN	2.7.4.23		3	1, 2
base_tigr	0	0	majority	ribophosphonate triphosphate hydrolase	3.-.-.-		3	1, 2
base_tigr	gs-sh	gs-sh	all-same	methylphosphonate degradation complex, subunit phnL			3	1, 2, 3
base_lit-s	orth	orth	all-same	phosphonate C-P lyase system protein PhnK			3	1, 2, 3
gs-sh	lit-s	map	all-same	carbon-phosphorous lyase	4.-.-.-		3	1, 2, 3
gs-sh	0	0	majority	methylphosphonate degradation complex, subunit phnI			3	1, 2
base_tigr	pfam-sh	gs-sh	all-same	methylphosphonate degradation complex, subunit phnH			3	1, 2, 3
base_tigr	pfam-sh	map	all-same	methylphosphonate degradation complex, subunit phnG			3	1, 2, 3
base_tigr	gs-sh	gs-sh	all-same	transcriptional regulator, GntR family			3	1, 2, 3
0	0	gs-sh	majority	ABC-type phosphate/phosphonate transport system, permease component			3	2, 3
base_one miss	gs-sh	base_one miss	all-same	Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)			2	1, 3
base_lit-s	gs-sh	map	all-same	phosphonate ABC transporter, periplasmic phosphonate binding protein			3	1, 2, 3
base_lit-s	lit-s	lit-s	all-same	phosphonate ABC transporter, ATP-binding protein	3.6.3.28		3	1, 2, 3
gs-sh	0	0	all-same	PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein			2	1, 2
gs-sh	tf_idf	lit-s	all-same	alkylphosphonate utilization operon protein PhnA	3.11.1.2		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
lit-s	0	0	majority	YjcZ-like protein.			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	metabolite-proton symporter			3	1, 2, 3
base_ec	gs-sh	gs-sh	all-same	Signal transduction histidine kinase	2.7.13.3		3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain			3	1, 2, 3
gs-sh	0	0	majority	Predicted membrane-associated, metal-dependent hydrolase			3	1, 2
gs-sh	lit-s	map	all-same	arginine:agmatine antiporter, APA family (TC 2.A.3.2.5)			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	transcriptional regulator, AraC family			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Arginine/lysine/ornithine decarboxylases	4.1.1.19		3	1, 2, 3
gs-sh	lit-s	orth	all-same	transcriptional regulator, AraC family			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	alpha-galactosidase (EC:3.2.1.22)	3.2.1.22		3	1, 2, 3
gs-sh	0	0	majority	sugar (Glycoside-Pentoside-Hexuronide) transporter			3	1, 2
gs-sh	lit-s	gs-sh	all-same	Predicted membrane protein			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	fumarase, class I, homodimeric (EC 4.2.1.2)	4.2.1.2		3	1, 2, 3
gs-sh	gs-sh	tf_idf	all-same	anaerobic c4-dicarboxylate membrane transporter family protein			3	1, 2, 3
gs-sh	0	0	majority	Response regulator of citrate/malate metabolism			3	1, 2
base_ec	0	0	majority	Signal transduction histidine kinase regulating citrate/malate metabolism	2.7.13.3		3	1, 2
base_one HP	base_one HP	lit-s	all-same	FIG00638676: hypothetical protein			0	2, 3
lit-s	orth	map	all-same	Predicted acetyltransferase			3	1, 2, 3
base_one HP	lit-s	base_one HP	all-same	hypothetical protein			0	1, 3
base_one HP	lit-s	base_one HP	all-same	hypothetical protein			0	1, 3
base_tigr	base_ec	base_ec	all-same	lysyl-tRNA synthetase, class II (EC 6.1.1.6)	6.1.1.6		3	1, 2, 3
gs-sh	0	0	majority	amino acid/peptide transporter (Peptide:H+ symporter), bacterial			3	1, 2
base_ec	base_ec	base_ec	all-same	L-lysine decarboxylase (EC 4.1.1.18)	4.1.1.18		3	1, 2, 3
base_tigr	0	0	majority	cadaverine:lysine antiporter, APA family (TC 2.A.3.2.2)			3	1, 2
gs-sh	orth	map	all-same	lysine decarboxylase transcriptional regulator, CadC			3	1, 2, 3
gs-sh	gs-sh	lit-s	all-same	transcriptional regulator, TetR family			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Thiol:disulfide interchange protein	1.8.1.8		3	1, 2, 3
gs-sh	orth	tf_idf	all-same	Uncharacterized protein involved in tolerance to divalent cations			3	1, 2, 3
gs-sh	0	0	majority	anaerobic c4-dicarboxylate membrane transporter family protein			3	1, 2
base_lit-s	base_ec	base_ec	all-same	aspartate ammonia-lyase	4.3.1.1		3	1, 2, 3
base_one HP	base_one HP	orth	all-same	Protein affecting phage T7 exclusion by the F plasmid			2	2, 3
gs-sh	gs-sh	map	all-same	amino acid exporter, AAE family (TC 2.A.3.13)			3	1, 2, 3
gs-sh	0	0	majority	Co-chaperonin GroES (HSP10)			3	1, 2
base_lit-s	0	0	majority	chaperonin GroL			3	1, 2
base_one HP	base_one HP	gs-sh	all-same	probable membrane protein yjeI			1	2, 3
base_one HP	lit-s	base_one HP	all-same	FIG00733146: hypothetical protein			0	1, 3
gs-sh	0	0	majority	L-lysine 2,3-aminomutase	5.4.3.2		3	1, 2
base_tigr	lit-s	tf_idf	all-same	translation elongation factor P (EF-P)			3	1, 2, 3
gs-sh	lit-s	orth	all-same	Bacterial lipocalin			3	1, 2, 3
gs-sh	lit-s	map	all-same	Membrane transporters of cations and cationic drugs			3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Beta-lactamase class C and other penicillin binding proteins	3.5.2.6		3	1, 2, 3
gs-sh	lit-s	map	all-same	succinate dehydrogenase subunit D	1.3.5.1		3	1, 2, 3
lit-s	lit-s	base_lit-s	all-same	Fumarate reductase subunit C			3	1, 2, 3
base_ec-d	base_ec	base_ec-d	majority	succinate dehydrogenase subunit B	1.3.99.1,1.3.5.1		3	1, 3
base_ec-d	base_ec	base_ec-d	majority	succinate dehydrogenase subunit A	1.3.99.1,1.3.5.1		3	1, 3
base_lit-s	0	0	majority	EF-P lysine aminoacylase GenX	6.1.1.6		3	1, 2
gs-sh	gs-sh	map	all-same	amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)			3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	FIG00639484: hypothetical protein			0	1, 2
gs-sh	0	lit-s	all-same	FIG00639836: hypothetical protein			1	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	base_ec	base_ec	all-same	phosphatidylserine decarboxylase precursor	4.1.1.65		3	1, 2, 3
base_lit-s	0	0	majority	ribosome small subunit-dependent GTPase A	3.6.1.-		3	1, 2
gs-sh	gs-sh	gs-sh	all-same	Oligoribonuclease (3'->5' exoribonuclease)	3.1.-		3	1, 2, 3
base_tigr	0	0	majority	iron-sulfur cluster binding protein, putative			3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_ec	base_ec	base_lit-s	all-same	N-acetylmuramoyl-L-alanine amidase	3.5.1.28		3	1, 2, 3
lit-s	lit-s	base_lit-s	all-same	DNA mismatch repair protein MutL			3	1, 2, 3
base_lit-s	base_lit-s	base_lit-s	all-same	tRNA dimethylallyltransferase	2.5.1.75		3	1, 2, 3
base_tigr	map	base_lit-s	all-same	RNA-binding protein Hfq			3	1, 2, 3
base_lit-s	base_lit-s	base_lit-s	all-same	GTP-binding protein HflX	3.1.5.-		3	1, 2, 3
base_tigr	lit-s	pfam-sh	all-same	protease FtsH subunit HflK	3.4.-		3	1, 2, 3
base_tigr	lit-s	gs-sh	all-same	protease FtsH subunit HflC	3.4.-		3	1, 2, 3
base_one HP	base_one HP	0	majority	Putative inner membrane protein YjeT (clustered with HflC)			1	
base_tigr	base_ec	base_ec	all-same	Adenylosuccinate synthetase (EC 6.3.4.4)	6.3.4.4		3	1, 2, 3
gs-sh	0	0	majority	transcriptional regulator, BadM/Rrf2 family			3	1, 2
gs-sh	0	0	majority	RNAse R	3.1.-,3.1.-.-		3	1, 2
gs-sh	lit-s	gs-sh	all-same	23S rRNA Gm-2251 2'-O-methyltransferase (EC 2.1.1.185)	2.1.1.185		3	1, 2, 3
base_one HP	lit-s	base_one HP	all-same	hypothetical protein			0	1, 3
gs-sh	lit-s	gs-sh	all-same	phage shock protein A (PspA) family protein			3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00638518: hypothetical protein			0	2, 3
base_one HP	base_one HP	lit-s	all-same	Predicted membrane protein			2	2, 3
base_one HP	base_one HP	0	majority	Predicted integral membrane protein			1	
0	0	0	man-rest	MANUAL-REST			3	
0	tf_idf	0	majority	Acyl-CoA dehydrogenases			3	1, 3
base_one HP	base_one HP	0	majority	Putative uncharacterized protein YjfN			1	
base_one HP	base_one HP	0	majority	Putative exported protein			1	
gs-sh	0	0	majority	transcriptional regulator, DeoR family			3	1, 2
gs-sh	0	0	majority	Hydrolases of the alpha/beta superfamily			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	0	0	majority	PTS system ascorbate-specific IIC component, L-Asc family (TC 4.A.7.1.1)			3	1, 2
base_ec	base_ec	base_ec	all-same	PTS system ascorbate-specific IIB component, L-Asc family (TC 4.A.7.1.1)	2.7.1.69		3	1, 2, 3
gs-sh	0	0	majority	PTS system ascorbate-specific IIA component, L-Asc family (TC 4.A.7.1.1)	2.7.1.69		3	1, 2
base_ec	base_ec	base_ec	all-same	3-keto-L-gulonate 6-phosphate decarboxylase (EC 4.1.1.85)	4.1.1.85		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.22)	5.1.3.22		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	L-ribulose 5-phosphate 4-epimerase (EC 5.1.3.4)	5.1.3.4		3	1, 2, 3
base_one HP	base_one HP	gs-sh	all-same	UPF0379 protein yjfY precursor			1	2, 3
base_tigr	map	lit-s	all-same	SSU ribosomal protein S6P			3	1, 2, 3
base_one miss	base_both miss	base_one miss	majority	restart primosome assembly protein PriB			1	
base_tigr	0	0	majority	SSU ribosomal protein S18P			3	1, 2
base_tigr	map	lit-s	all-same	LSU ribosomal protein L9P			3	1, 2, 3
base_one HP	base_one HP	gs-sh	all-same	Uncharacterized protein yjfZ			1	2, 3
0	0	lit-s	majority	Cell envelope opacity-associated protein A			3	2, 3
lit-s	lit-s	base_lit-s	all-same	hypothetical protein			0	1, 2, 3
base_ec	base_ec	base_ec	all-same	FKBP-type peptidyl-prolyl cis-trans isomerases 1	5.2.1.8		3	1, 2, 3
gs-sh	base_lit-s	map	all-same	D-serine/D-alanine/glycine:proton symporter, AAT family (TC 2.A.3.1.7)			3	1, 2, 3
base_lit-s	0	0	majority	iron-sulfur cluster repair di-iron protein			3	1, 2
gs-sh	orth	orth	all-same	Permeases of the drug/metabolite transporter (DMT) superfamily			3	1, 2, 3
gs-sh	0	0	majority	Predicted nucleoside-diphosphate-sugar epimerases			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
base_lit-s	base_ec	base_ec	all-same	2',3'-cyclic-nucleotide 2'-phosphodiesterase	3.1.4.16		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)	3.1.3.7		3	1, 2, 3
lit-s	base_one HP	base_one HP	all-same	FIG00639934: hypothetical protein			0	1, 2
base_one HP	base_one HP	gs-sh	all-same	conserved hypothetical protein YtfJ-family, TIGR01626			2	2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00614015: hypothetical protein			0	2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_ec	base_ec	base_ec	all-same	methionine-S-sulfoxide reductase	1.8.4.11		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			2	
gs-sh	0	0	majority	Growth regulator			3	1, 2
gs-sh	0	0	majority	Growth inhibitor	3.1.-		3	1, 2
base_ec	base_ec	base_lit-s	all-same	Inorganic pyrophosphatase	3.6.1.1		3	1, 2, 3
gs-sh	0	0	majority	monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)			3	1, 2
0	0	base_ec	majority	monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-)	3.6.3.17		3	2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_ec	base_ec	base_ec	all-same	D-fructose 1,6-bisphosphatase (EC 3.1.3.11)	3.1.3.11		3	1, 2, 3
base_tigr	map	base_lit-s	all-same	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	6.3.2.-		3	1, 2, 3
base_one HP	base_one HP	0	majority	FIG138315: Putative alpha helix protein			1	
gs-sh	gs-sh	gs-sh	all-same	microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62			3	1, 2, 3
lit-s	lit-s	base_lit-s	all-same	Soluble cytochrome b562			3	1, 2, 3
base_tigr	base_ec	base_ec-d	all-same	ribonucleoside-triphosphate reductase class III activase subunit	1.97.1.4,1.17.4.2		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	ribonucleoside-triphosphate reductase class III catalytic subunit (EC 1.17.4.2)	1.17.4.2		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	trehalose-6-phosphate hydrolase (EC 3.2.1.93)	3.2.1.93		3	1, 2, 3
gs-sh	base_ec-d	0	majority	PTS system trehalose-specific IIB component, Glc family (TC 4.A.1.2.4)/PTS system trehalose-specific IIC component, Glc family (TC 4.A.1.2.4)			3	1, 2
base_tigr	gs-sh	map	all-same	transcriptional regulator, LacI family			3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	magnesium-translocating P-type ATPase	3.6.3.2		3	1, 2, 3
lit-s	pfam-sh	pfam-sh	all-same	endoribonuclease L-PSP, putative			3	1, 2, 3
base_lit-s	gs-sh	gs-sh	all-same	aspartate carbamoyltransferase, regulatory subunit			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	aspartate carbamoyltransferase (EC 2.1.3.2)	2.1.3.2		3	1, 2, 3
gs-sh	orth	map	all-same	Putative translation initiation inhibitor, yjgF family			3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	gs-sh	pfam-sh	all-same	transcriptional regulator, TetR family			3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
lit-s	base_one HP	base_one HP	all-same	"Protein YjgL, putative CCAAT-box DNA binding protein subunit B"			1	1, 2
base_tigr	base_ec	base_ec	all-same	ornithine carbamoyltransferase (EC 2.1.3.3)	2.1.3.3		3	1, 2, 3
gs-sh	0	0	all-same	Ribonuclease E inhibitor RraB			2	1, 2
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	lit-s	orth	all-same	Predicted membrane protein			3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	valyl-tRNA synthetase (EC 6.1.1.9)	6.1.1.9		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	DNA polymerase III, chi subunit (EC 2.7.7.7)	2.7.7.7		3	1, 2, 3
base_ec-d	base_ec-d	base_ec	majority	aminopeptidase A. Metallo peptidase. MEROPS family M17	3.4.11.1		3	2, 3
gs-sh	0	0	majority	Predicted permeases			3	1, 2
gs-sh	gs-sh	map	all-same	Predicted permeases			3	1, 2, 3
base_one HP	base_one HP	0	majority	Predicted ATPase			1	
gs-sh	0	0	majority	transcriptional regulator, LacI family			3	1, 2
gs-sh	0	0	majority	L-idonate permease (TC 2.A.8.1.2)			3	1, 2
base_ec	base_ec	base_ec	all-same	5-keto-D-gluconate 5-reductase (EC 1.1.1.69)	1.1.1.69		3	1, 2, 3
base_ec	base_lit-s	base_ec	all-same	L-idonate 5-dehydrogenase (EC 1.1.1.264)	1.1.1.264		3	1, 2, 3
base_tigr	map	base_ec	all-same	gluconate kinase, SKI family (EC 2.7.1.12)	2.7.1.12		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_both miss	base_one HP	all-hp	hypothetical protein	HP		0	
orth	0	0	majority	Integrase			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	base_one miss	majority	Dca			1	
0	base_one HP	base_one HP	man-rest	MANUAL-REST			2	
lit-s	base_one HP	base_one HP	all-same	Dca			1	1, 2
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
base_one miss	0	base_one miss	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_one miss	base_both miss	base_one miss	majority	Transposase and inactivated derivatives			1	
lit-s	lit-s	base_lit-s	all-same	hypothetical protein			0	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
gs-sh	gs-sh	gs-sh	all-same	ABC-type Fe3+-siderophore transport system, permease component			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	gs-sh	majority	ABC-type Fe3+-citrate transport system, periplasmic component			3	2, 3
gs-sh	gs-sh	gs-sh	all-same	TonB-dependent siderophore receptor			3	1, 2, 3
lit-s	map	pfam-sh	all-same	FecR family protein			3	1, 2, 3
gs-sh	lit-s	map	all-same	DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog			3	1, 2, 3
base_one miss	0	base_one miss	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
base_tigr	0	0	majority	gluconate permease GntP (TC 2.A.8.1.1)			3	1, 2
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	base_ec	all-same	Dihydrodipicolinate synthase/N-acetylneuraminate lyase	4.2.1.52		2	2, 3
lit-s	gs-sh	gs-sh	all-same	Transcriptional regulator			3	1, 2, 3
orth	orth	orth	all-same	transcriptional regulator, DeoR family			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
0	orth	0	majority	membrane complex biogenesis protein, BtpA family			3	1, 3
gs-sh	0	0	majority	PTS system unknown substrate IIC component, Gat family (TC 4.A.5.1.3)			3	1, 2
0	orth	0	majority	PTS system unknown substrate IIB component, Gat family (TC 4.A.5.1.3)	2.7.1.69		3	1, 3
0	0	gs-sh	majority	Cellulase M and related proteins			3	2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
lit-s	lit-s	lit-s	all-same	Predicted acetyltransferase			3	1, 2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00640575: hypothetical protein			0	2, 3
base_one miss	0	base_one miss	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	lit-s	all-same	FIG00639826: hypothetical protein			0	2, 3
gs-sh	0	0	majority	mutatrotase, YjhT family			3	1, 2
0	lit-s	0	majority	N-acetylneuraminate-specific porin (TC 1.B.35.2.1)			3	1, 3
0	0	0	man-rest	MANUAL-REST			3	
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	orth	map	all-same	P pilus assembly protein, pilin FimA			3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
gs-sh	lit-s	map	all-same	P pilus assembly protein, chaperone PapD			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	P pilus assembly protein, porin PapC			3	1, 2, 3
gs-sh	0	0	majority	P pilus assembly protein, pilin FimA			3	1, 2
gs-sh	0	0	majority	P pilus assembly protein, pilin FimA			3	1, 2
gs-sh	0	0	majority	FimH, mannose binding./Fimbrial protein.			3	1, 2
gs-sh	0	0	majority	D-fructuronate permease (TC 2.A.8.1.3)			3	1, 2
base_tigr	base_ec	base_ec	all-same	D-mannonate dehydratase (EC 4.2.1.8)	4.2.1.8		3	1, 2, 3
0	0	base_ec	majority	fructuronate reductase (EC 1.1.1.57)	1.1.1.57		3	2, 3
base_one HP	base_one miss	base_one HP	all-hp	hypothetical protein	HP		0	
gs-sh	map	orth	all-same	transcriptional regulator, GntR family			3	1, 2, 3
base_one HP	base_one HP	0	majority	Uncharacterized protein YjiC			1	
gs-sh	map	orth	all-same	Transcriptional regulator			3	1, 2, 3
gs-sh	orth	0	all-same	YjiD protein			2	1, 2, 3
base_tigr	base_ec	map	all-same	isoaspartyl dipeptidase. Metallo peptidase. MEROPS family M38	3.4.19.-		3	1, 2, 3
gs-sh	orth	lit-s	all-same	Uncharacterized membrane protein			3	1, 2, 3
0	0	lit-s	all-same	FIG00637915: hypothetical protein			1	2, 3
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
gs-sh	map	base_lit-s	all-same	RNA:NAD 2'-phosphotransferase	2.7.1.-		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	lit-s	all-same	FIG00637952: hypothetical protein			0	2, 3
base_one HP	base_one HP	lit-s	all-same	FIG00638136: hypothetical protein			0	2, 3
base_tigr	0	0	all-same	CoA-substrate-specific enzyme activase, putative			2	1, 2
0	0	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
gs-sh	0	0	all-same	Arabinose efflux permease			2	1, 2
base_one miss	0	base_one miss	majority	putatitve membrane protein			1	
base_tigr	base_one HP	base_one HP	all-same	conserved hypothetical protein (putative transposase or invertase)			1	1, 2
base_tigr	0	0	all-same	conserved hypothetical protein (putative transposase or invertase)			2	1, 2
base_one HP	base_one HP	pfam-sh	all-same	transcriptional regulator, GntR family			2	2, 3
base_one HP	base_one HP	0	majority	Uncharacterized conserved small protein			1	
lit-s	lit-s	base_lit-s	all-same	hypothetical protein			0	1, 2, 3
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
lit-s	0	0	majority	McrBC 5-methylcytosine restriction system component			3	1, 2
gs-sh	0	0	majority	GTPase subunit of restriction endonuclease	3.1.21.-		3	1, 2
gs-sh	0	0	all-same	Toxin SymE, type I toxin-antitoxin system.			2	1, 2
gs-sh	map	base_ec	all-same	Restriction endonuclease S subunits	3.1.21.3		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	Type I restriction-modification system methyltransferase subunit	2.1.1.72		3	1, 2, 3
0	0	base_ec	majority	Type I site-specific restriction-modification system, R (restriction) subunit and related helicases	3.1.21.3		3	2, 3
gs-sh	lit-s	orth	all-same	Restriction endonuclease			3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	gs-sh	all-same	Uncharacterized small protein			2	2, 3
gs-sh	map	tf_idf	all-same	Carbon starvation protein, predicted membrane protein			3	1, 2, 3
gs-sh	tf_idf	map	all-same	methyl-accepting chemotaxis sensory transducer with TarH sensor			3	1, 2, 3
gs-sh	0	0	majority	Sugar phosphate permease			3	1, 2
gs-sh	0	0	majority	transcriptional regulator, GntR family			3	1, 2
0	0	0	man-rest	MANUAL-REST			3	
0	0	base_ec	majority	phosphatidylglycerol-membrane-oligosaccharide glycerophosphotransferase (EC 2.7.8.20)	2.7.8.20		3	2, 3
base_one HP	base_one HP	0	majority	Putative glycoprotein/receptor			1	
gs-sh	lit-s	gs-sh	all-same	replicative DNA helicase loader DnaC			3	1, 2, 3
base_one HP	orth	base_one HP	all-same	Primosomal protein I			2	1, 3
base_one HP	base_one HP	0	majority	FIG001826: putative inner membrane protein			1	
gs-sh	0	0	all-same	FIG023911: putative membrane protein			2	1, 2
gs-sh	0	0	majority	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain			3	1, 2
gs-sh	gs-sh	gs-sh	all-same	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain			3	1, 2, 3
base_lit-s	0	0	majority	siderophore-iron reductase FhuF			3	1, 2
base_one HP	base_one HP	lit-s	all-same	FIG00638078: hypothetical protein			0	2, 3
base_ec-d	base_ec-d	base_ec-d	man-rest	MANUAL-REST			3	
base_tigr	base_ec	base_ec	all-same	DNA polymerase III, psi subunit (EC 2.7.7.7)	2.7.7.7		3	1, 2, 3
base_tigr	gs-sh	map	all-same	[SSU ribosomal protein S18P]-alanine acetyltransferase (EC 2.3.1.128)	2.3.1.128		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	HAD superfamily (subfamily IA) hydrolase, TIGR02254	3.1.3.5		3	1, 2, 3
gs-sh	lit-s	tf_idf	all-same	bacterial peptide chain release factor 3 (bRF-3)			3	1, 2, 3
gs-sh	gs-sh	gs-sh	all-same	Predicted periplasmic or secreted lipoprotein			3	1, 2, 3
base_one HP	base_one HP	0	man-rest	MANUAL-REST			2	
0	0	0	man-rest	MANUAL-REST			2	
base_one HP	base_one HP	orth	all-same	Mg-dependent DNase	3.1.21.-		2	2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_one HP	base_one HP	0	majority	glycine radical enzyme, YjjI family			1	
base_one HP	base_one HP	base_one miss	all-hp	hypothetical protein	HP		0	
base_lit-s	base_ec	base_ec	all-same	deoxyribose-phosphate aldolase	4.1.2.4		3	1, 2, 3
base_ec	base_ec	base_ec	all-same	thymidine phosphorylase (EC 2.4.2.4)	2.4.2.4		3	1, 2, 3
base_lit-s	base_ec	base_ec	all-same	phosphopentomutase	5.4.2.7		3	1, 2, 3
base_tigr	base_ec	base_ec	all-same	purine-nucleoside phosphorylase (EC 2.4.2.1)	2.4.2.1		3	1, 2, 3
gs-sh	0	0	all-same	HipA-like C-terminal domain./HipA-like N-terminal domain.			2	1, 2
gs-sh	lit-s	orth	all-same	lipoate-protein ligase	2.7.7.63,6.-.-.-		3	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_ec	base_ec	base_ec	all-same	phosphoserine phosphatase (EC 3.1.3.3)	3.1.3.3		3	1, 2, 3
base_lit-s	base_lit-s	base_lit-s	all-same	DNA repair protein RadA			3	1, 2, 3
gs-sh	base_ec-d	0	majority	Predicted ATPase/kinase involved in NAD metabolism			3	1, 2
base_one HP	0	base_one HP	man-rest	MANUAL-REST			2	
gs-sh	gs-sh	map	all-same	ATP-binding cassette protein, ChvD family			3	1, 2, 3
gs-sh	gs-sh	tf_idf	all-same	Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)	3.2.1.-		3	1, 2, 3
base_tigr	0	0	majority	Trp operon repressor			3	1, 2
base_one HP	base_one HP	0	majority	Inosine/xanthosine triphosphatase	3.6.1.-		1	
gs-sh	lit-s	orth	all-same	transcriptional regulator, AraC family			3	1, 2, 3
gs-sh	gs-sh	base_ec	all-same	phosphoglycerate mutase (EC 5.4.2.1)	5.4.2.1		3	1, 2, 3
gs-sh	lit-s	gs-sh	all-same	Conserved uncharacterized protein CreA			2	1, 2, 3
0	0	0	man-rest	MANUAL-REST			3	
base_ec	0	0	majority	Signal transduction histidine kinase	2.7.13.3		3	1, 2
gs-sh	lit-s	tf_idf	all-same	Inner membrane protein involved in colicin E2 resistance			3	1, 2, 3
0	0	gs-sh	majority	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain			3	2, 3
base_tigr	lit-s	map	all-same	rRNA methylase	2.1.1.-		3	1, 2, 3
